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dsh-bio
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public |
Tools for BED, FASTA, FASTQ, GAF, GFA1/2, GFF3, PAF, SAM, and VCF files
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2024-06-09 |
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megalodon
|
public |
Nanopore modified base and sequence variant detection.
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2024-06-09 |
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smncopynumbercaller
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public |
Call copy number of SMN1, SMN2, and SMN2Δ7–8 from a BAM file.
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2024-06-09 |
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elector
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public |
ELECTOR EvaLuator of Error Correction Tools for lOng Reads
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2024-06-09 |
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taxpasta
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public |
TAXonomic Profile Aggregation and STAndardisation
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2024-06-08 |
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pgr-tk
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public |
A PanGenomic Research Took Kit. This repository is a project to provide Python and Rust libraries to facilitate pangenomics analysis.
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2024-06-08 |
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chips
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public |
ChIPs is a tool for simulating ChIP-sequencing experiments.
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2024-06-08 |
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rsv-typer
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public |
Genotyping RSV samples from nanopore sequencing data
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2024-06-07 |
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frogs
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public |
FROGS is a workflow designed to metabarcoding sequence analysis
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2024-06-07 |
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rrikindp
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public |
Evaluation of thermodynamic and kinetic features of RNA-RNA interactions.
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2024-06-07 |
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perl-dbm-deep
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public |
A pure perl multi-level hash/array DBM that supports transactions
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2024-06-07 |
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galitime
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public |
benchmarking of scientific computaional experiments
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2024-06-07 |
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tbvcfreport
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public |
Parses SnpEff annotated M.tb VCF(s) and generates an interactive HTML-based report.
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2024-06-07 |
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mmlong2-lite
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public |
Lightweight workflow for microbial genome recovery using either Nanopore or PacBio HiFi reads
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2024-06-07 |
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cialign
|
public |
Toolkit for cleaning and interpreting multiple sequence alignments
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2024-06-07 |
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bioconductor-cytoml
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public |
A GatingML Interface for Cross Platform Cytometry Data Sharing
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2024-06-06 |
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seqhax
|
public |
A collection of next-gen sequence data utilities
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2024-06-06 |
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squid
|
public |
Detector for fusion-gene and non-fusion-gene transcriptomic structural variations from RNA-seq data
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2024-06-06 |
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tksm
|
public |
Very modular, very cool long-read transcriptomic simulator
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2024-06-06 |
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bioconductor-iclusterplus
|
public |
Integrative clustering of multi-type genomic data
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2024-06-06 |
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megapath
|
public |
MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon data
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2024-06-06 |
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hapog
|
public |
Haplotype-Aware Polishing of Genomes
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2024-06-06 |
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sonlib
|
public |
Small general purpose library for C and Python with focus on bioinformatics.
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2024-06-06 |
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celltypist
|
public |
A tool for semi-automatic cell type annotation
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2024-06-06 |
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ariba
|
public |
ARIBA: Antibiotic Resistance Identification By Assembly
|
2024-06-05 |
|
igblast
|
public |
A tool for analyzing immunoglobulin (IG) and T cell receptor (TR) sequences
|
2024-06-05 |
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perl-test2-suite
|
public |
Distribution with a rich set of tools built upon the Test2 framework.
|
2024-06-05 |
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forgi
|
public |
RNA Graph Library
|
2024-06-05 |
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integron_finder
|
public |
Integron Finder aims at detecting integrons in DNA sequences
|
2024-06-05 |
|
ragout
|
public |
Chromosome-level scaffolding using multiple references
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2024-06-05 |
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peakranger
|
public |
PeakRanger is a multi-purporse software suite for analyzing next-generation sequencing (NGS) data.
|
2024-06-05 |
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zarp
|
public |
User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline
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2024-06-05 |
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commet
|
public |
Comparing and combining multiple metagenomic datasets
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2024-06-05 |
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npinv
|
public |
an accurate tool for detecting and genotyping inversion using multiple alignment long reads
|
2024-06-05 |
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mztosqlite
|
public |
Convert proteomics data files into a SQLite database.
|
2024-06-05 |
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gametes
|
public |
Tool for the generation of complex single SNP models
|
2024-06-04 |
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metanovo
|
public |
Produce targeted databases for mass spectrometry analysis.
|
2024-06-04 |
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squeakr
|
public |
An Exact and Approximate k-mer Counting System
|
2024-06-04 |
|
assemblycomparator2
|
public |
assemblycomparator2: Compare prokaryotic genomic assemblies
|
2024-06-04 |
|
pcst-fast
|
public |
A fast implementation of the Goemans-Williamson scheme for the PCST (prize-collecting Steiner tree/forest) problem.
|
2024-06-04 |
|
dawg
|
public |
DNA Assembly with Gaps (Dawg) is an application designed to simulate the evolution of recombinant DNA sequences in continuous time based on the robust general time reversible model with gamma and invariant rate heterogeneity and a novel length-dependent model of gap formation.
|
2024-06-04 |
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cassiopee
|
public |
scan an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions
|
2024-06-04 |
|
bandage_ng
|
public |
Bandage - a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
|
2024-06-04 |
|
batch_brb
|
public |
A tool for the automation of best reciprocal BLAST and phylogenetic analysis using FastTree.
|
2024-06-04 |
|
orthofisher
|
public |
Orthofisher is a broadly applicable tool for automated gene identification and retrieval.
|
2024-06-03 |
|
bacpage
|
public |
An easy-to-use pipeline for the assembly and analysis of bacterial genomes
|
2024-06-03 |
|
snakemake-executor-plugin-lsf
|
public |
A Snakemake executor plugin for submitting jobs to a LSF cluster.
|
2024-06-03 |
|
ervdetective
|
public |
An efficient pipeline for identification and annotation of endogenous retroviruses (ERVs).
|
2024-06-03 |
|
nanomonsv
|
public |
Python tools for detecting structural variation from nanopore sequence data
|
2024-06-03 |
|
sspace_basic
|
public |
Scaffolding Pre-Assemblies After Contig Extension (SSPACE)
|
2024-06-03 |
