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altamisa
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public |
Alternative Python API for accessing ISA-tab files.
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2024-10-28 |
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dapcy
|
public |
An sklearn implementation of discriminant analysis of principal components (DAPC) for population genetics.
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2024-10-28 |
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lima
|
public |
lima - The PacBio Barcode Demultiplexer
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2024-10-28 |
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pbaa
|
public |
PacBio tool to cluster HiFi reads and generate high quality consensus sequences
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2024-10-28 |
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hlafreq
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public |
Download and combine HLA frequency data from multiple studies.
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2024-10-28 |
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sopa
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public |
Spatial-omics pipeline and analysis.
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2024-10-28 |
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isoseq
|
public |
Iso-Seq - Scalable De Novo Isoform Discovery
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2024-10-28 |
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pbskera
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public |
PacBio tool to split concatenated read designs
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2024-10-28 |
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masurca
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public |
MaSuRCA (Maryland Super-Read Celera Assembler) genome assembly software. MaSuRCA requires Illumina data, and supports third-generation PacBio/Nanopore MinION reads for hybrid assembly.
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2024-10-28 |
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shortstack
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public |
ShortStack: Comprehensive annotation and quantification of small RNA genes
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2024-10-28 |
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nanoqc
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public |
Create fastQC-like plots for Oxford Nanopore sequencing data.
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2024-10-28 |
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haystac
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public |
Species identification pipeline for both single species and metagenomic samples.
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2024-10-26 |
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strainy
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public |
Assembly-based metagenomic strain phasing using long reads
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2024-10-26 |
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fastqe
|
public |
A emoji based bioinformatics command line tool.
|
2024-10-25 |
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flexiformatter
|
public |
Moving flexiplex barcode and UMI to bam tags
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2024-10-25 |
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biobb_flexdyn
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public |
Biobb_flexdyn is a BioBB category for studies on the conformational landscape of native proteins.
|
2024-10-25 |
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blaze2
|
public |
Barcode identification from (Nanopore) Long reads for AnalyZing single-cell gene Expression.
|
2024-10-25 |
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augustus
|
public |
AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller. It can be used as an ab initio program, which means it bases its prediction purely on the sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources such as EST, MS/MS, protein alignments and synthenic genomic alignments.
|
2024-10-24 |
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cytoscape
|
public |
Cytoscape: an open source platform for network analysis and visualization.
|
2024-10-24 |
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snippy
|
public |
Rapid bacterial SNP calling and core genome alignments
|
2024-10-24 |
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assembly_finder
|
public |
Snakemake-powered cli pipeline to download genomes with NCBI datasets
|
2024-10-24 |
|
genmod
|
public |
Annotate genetic inheritance models in variant files
|
2024-10-24 |
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steamboat
|
public |
A collection of tools/scripts for microbial bioinformatics
|
2024-10-24 |
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mikrokondo-tools
|
public |
A collection of utilities to make using the mikrokondo pipeline easier
|
2024-10-23 |
|
pggb
|
public |
PanGenome Graph Building pipeline renders
|
2024-10-23 |
|
mkdesigner
|
public |
Genome-wide design of markers for PCR-based genotyping from NGS data.
|
2024-10-23 |
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macsyfinder
|
public |
MacSyFinder: Detection of macromolecular systems in protein datasets using systems modelling and similarity search
|
2024-10-23 |
|
snakedeploy
|
public |
Helper for deploying published Snakemake pipelines.
|
2024-10-23 |
|
pykofamsearch
|
public |
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer.
|
2024-10-22 |
|
clinvar-this
|
public |
ClinVar Submission API Made Easy.
|
2024-10-22 |
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r-saccharis
|
public |
A rendering package for creating phylogenetic trees from SACCHARIS .json and .tree files, in the R statistical computing language.
|
2024-10-22 |
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mofapy2
|
public |
Multi-Omics Factor Analysis
|
2024-10-22 |
|
trim-galore
|
public |
Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control
|
2024-10-22 |
|
hificnv
|
public |
Copy number variant caller and depth visualization utility for PacBio HiFi reads
|
2024-10-22 |
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telosearchlr
|
public |
TeloSearchLR (telomere search using long sequencing reads) is a Python script for aiding the identificaiton of telomeric repeat motifs.
|
2024-10-22 |
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hictk
|
public |
Blazing fast toolkit to work with .hic and .cool files
|
2024-10-22 |
|
scoring-matrices
|
public |
Dependency free, Cython-compatible scoring matrices to use with biological sequences.
|
2024-10-22 |
|
rosella
|
public |
Metagenomic binning pipeline and algorithm using UMAP and HDBSCAN
|
2024-10-22 |
|
perl-excel-writer-xlsx
|
public |
Create a new file in the Excel 2007+ XLSX format.
|
2024-10-22 |
|
cosigt
|
public |
Cosigt (COsine SImilarity-based GenoTyper)
|
2024-10-21 |
|
pyhmmsearch
|
public |
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer.
|
2024-10-21 |
|
metagenome-atlas
|
public |
ATLAS - Three commands to start analysing your metagenome data
|
2024-10-21 |
|
irma
|
public |
IRMA: Iterative Refinement Meta-Assembler for the robust assembly, variant calling, and phasing of highly variable RNA viruses.
|
2024-10-21 |
|
splash
|
public |
Unsupervised and reference-free unifying framework to discover regulated sequence variation through statistical analysis of k-mer composition in both DNA and RNA sequence.
|
2024-10-21 |
|
biobb_cp2k
|
public |
Biobb_cp2k is a BioBB category for CP2K QM package.
|
2024-10-21 |
|
ezcharts
|
public |
eCharts plotting API.
|
2024-10-21 |
|
kb-python
|
public |
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing.
|
2024-10-21 |
|
fastq-dl
|
public |
A tool to download FASTQs associated with Study, Experiment, or Run accessions.
|
2024-10-21 |
|
sdeper
|
public |
Spatial Deconvolution method with Platform Effect Removal
|
2024-10-20 |
|
gene-trajectory-python
|
public |
Compute gene trajectories
|
2024-10-19 |
