|
ltr_retriever
|
public |
Sensitive and accurate identification of LTR retrotransposons
|
2024-12-06 |
|
tesorter
|
public |
Lineage-level classification of transposable elements using conserved protein domains.
|
2024-12-06 |
|
optilcms
|
public |
Pipeline for processing LC-MS raw data with optimized parameters.
|
2024-12-06 |
|
mm2plus
|
public |
Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
|
2024-12-06 |
|
sap
|
public |
Pairwise structure alignment via double dynamic programming
|
2024-12-06 |
|
phytop
|
public |
Phytop: A tool for visualizing and recognizing signals of incomplete lineage sorting and hybridization using species trees output from ASTRAL
|
2024-12-06 |
|
nextstrain-cli
|
public |
The Nextstrain command-line interface (CLI)
|
2024-12-06 |
|
pytrf
|
public |
a fast Python package for finding tandem repeat sequences
|
2024-12-06 |
|
amplicon_coverage_plot
|
public |
Generate an amplicon coverage plot
|
2024-12-05 |
|
rmblast
|
public |
RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST+ suite.
|
2024-12-05 |
|
cellqc
|
public |
Cellqc standardizes the qualiy control of single-cell RNA-Seq (scRNA) data to render clean feature count matrices.
|
2024-12-05 |
|
cgecore
|
public |
Center for Genomic Epidemiology Core Module
|
2024-12-05 |
|
sistr_cmd
|
public |
Salmonella In Silico Typing Resource (SISTR) commandline tool for serovar prediction
|
2024-12-05 |
|
dysgu
|
public |
A collection of tools for calling structural variants using short or long reads
|
2024-12-05 |
|
pplacer
|
public |
Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment.
|
2024-12-05 |
|
busco
|
public |
Assessment of assembly completeness using Universal Single Copy Orthologs.
|
2024-12-05 |
|
foldmason
|
public |
Multiple Protein Structure Alignment at Scale with FoldMason
|
2024-12-05 |
|
bwa-mem2
|
public |
The next version of bwa-mem
|
2024-12-05 |
|
perl-bio-samtools
|
public |
Read SAM/BAM files
|
2024-12-05 |
|
mosdepth
|
public |
Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing.
|
2024-12-05 |
|
ppanggolin
|
public |
PPanGGOLiN: Depicting microbial species diversity via a Partitioned PanGenome Graph
|
2024-12-05 |
|
mustang
|
public |
Mustang is a program that implements an algorithm for structural alignment of multiple protein structures.
|
2024-12-04 |
|
bamscale
|
public |
BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks.
|
2024-12-04 |
|
flexsweep
|
public |
A versatile tool for detecting selective sweeps
|
2024-12-04 |
|
parnas
|
public |
Representative taxon sampling from phylogenetic trees
|
2024-12-04 |
|
gambit
|
public |
Tool for rapid taxonomic identification of microbial pathogens
|
2024-12-04 |
|
trust4
|
public |
TCR and BCR assembly from bulk or single-cell RNA-seq data
|
2024-12-04 |
|
mashmap
|
public |
A fast approximate aligner for long DNA sequences.
|
2024-12-04 |
|
alignlib-lite
|
public |
Simple wrapper around alignlib C++ library for sequence alignment
|
2024-12-04 |
|
ntedit
|
public |
Ultrafast, lightweight, scalable genome assembly polishing, and SNV detection & annotation
|
2024-12-03 |
|
ntroot
|
public |
Ancestry inference from genomic data
|
2024-12-03 |
|
apscale
|
public |
Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data.
|
2024-12-03 |
|
liftover
|
public |
A Python package for converting point coordinates between genome assemblies, inspired by pyliftover.
|
2024-12-03 |
|
sneakernet-qc
|
public |
A QC pipeline for raw reads
|
2024-12-03 |
|
cell2cell
|
public |
Inferring cell-cell interactions from transcriptomes with cell2cell
|
2024-12-03 |
|
cadd-scripts
|
public |
CADD scripts release for offline scoring
|
2024-12-03 |
|
rotate
|
public |
Simple program to rotate a circular sequence to start at a given position or string.
|
2024-12-03 |
|
versionix
|
public |
Get version of any tools.
|
2024-12-03 |
|
fastplong
|
public |
Ultra-fast preprocessing and quality control for long-read sequencing data.
|
2024-12-03 |
|
quota_anchor
|
public |
Strand and WGD aware syntenic gene identification
|
2024-12-03 |
|
seqscreen
|
public |
SeqScreen was created to sensitively assign taxonomic classifications, functional annotations, and Functions of Sequences of Concern (FunSoCs) to single, short DNA sequences or open reading frames.
|
2024-12-02 |
|
fastp
|
public |
A ultra-fast FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...)
|
2024-12-02 |
|
phanotate
|
public |
Phanotate gene caller for phages
|
2024-12-02 |
|
strainge
|
public |
Strain Genome Explorer: a tool suite for tracking and characterizing low-abundance strains.
|
2024-12-02 |
|
gubbins
|
public |
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.
|
2024-12-02 |
|
unassigner
|
public |
Type strain identification for 16S reads
|
2024-12-02 |
|
graphaligner
|
public |
Sequence to graph aligner for long reads
|
2024-12-02 |
|
baitfisher
|
public |
No Summary
|
2024-12-02 |
|
hictkpy
|
public |
Python bindings for hictk: read and write .cool and .hic files directly from Python
|
2024-12-01 |
|
ropebwt3
|
public |
Constructs the FM-index of a large DNA sequence set and searches for matches against the FM-index.
|
2024-12-01 |
