• License: AGPL-3.0-or-later
• Home: https://github.com/jlumpe/gambit
• Development: https://github.com/jlumpe/gambit
• Documentation: https://gambit-genomics.readthedocs.io/en/latest
• 7131 total downloads
• Last upload: 5 months and 15 days ago

Description

GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking) is a tool for rapid taxonomic identification of microbial pathogens. It uses an extremely efficient genomic distance metric along with a curated database of approximately 50,000 reference genomes (derived from NCBI RefSeq) to identify unknown bacterial genomes within seconds.