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poolsnp
|
public |
PoolSNP is a heuristic SNP caller, which uses an MPILEUP file and a reference genome in FASTA format as inputs.
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2025-04-22 |
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rapidshapes
|
public |
RapidShapes computes a thermodynamic matcher (TDM), using a runtime heuristic for probabilistic shape analysis.
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2025-04-22 |
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r-epitrace
|
public |
Inference of cell age and phylogeny from single cell ATAC data.
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2025-04-22 |
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r-easylift
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public |
A convenience package for converting between popular mouse & human builds.
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2025-04-22 |
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scrubby
|
public |
Read depletion/extraction and database cleaning using k-mer and alignment methods
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2025-04-22 |
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cmaple
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public |
MAximum Parsimonious Likelihood Estimation in C/C++.
|
2025-04-22 |
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pytximport
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public |
pytximport - gene count estimation from transcript-level quantification
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2025-04-22 |
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jupiterplot
|
public |
Circos Assembly Consistency (Jupiter) plot
|
2025-04-22 |
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gia
|
public |
Genomic Interval Arithmetic (gia)
|
2025-04-22 |
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cassiopeia
|
public |
The Cython compiler for writing C extensions in the Python language.
|
2025-04-22 |
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rnaalishapes
|
public |
RNAalishapes is a tool for secondary structure prediction, using shape abstraction. Input is a multiple sequence alignment. Pseudoknots are not considered at all.
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2025-04-22 |
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palikiss
|
public |
pAliKiss predicts RNA secondary structures for fixed RNA multiple sequence alignments, with special attention for pseudoknotted structures.
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2025-04-22 |
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metacerberus-lite
|
public |
MetaCerberus with reduced dependencies: Versatile Functional Ontology Assignments for Metagenomes via Hidden Markov Model (HMM) searching with environmental focus of shotgun meta'omics data
|
2025-04-22 |
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r-spacexr
|
public |
Cell type identification and cell type-specific differential expression in spatial transcriptomics
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2025-04-22 |
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gtdb_to_taxdump
|
public |
GTDB database utility scripts
|
2025-04-22 |
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segul
|
public |
An ultrafast and memory efficient tool for phylogenomics
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2025-04-22 |
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constava
|
public |
Calculate conformational states probability and variability from a protein structure ensemble
|
2025-04-22 |
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voyager
|
public |
Rapid and efficient mapping algorithm for long sequencing reads with insertion- and deletion errors.
|
2025-04-22 |
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flumutdb
|
public |
Utility module for FluMut database.
|
2025-04-22 |
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clermontyping
|
public |
determine the Clermont E coli phylotype
|
2025-04-22 |
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icfree-ml
|
public |
Design of experiments (DoE) and machine learning packages for the iCFree project
|
2025-04-22 |
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mvip
|
public |
MVP v.1.0, a user-friendly pipeline written in Python and providing a simple framework to perform standard viromics analyses. MVP combines multiple tools to enable viral genome identification, characterization of genome quality, filtering, clustering, taxonomic and functional annotation, genome binning, and comprehensive summaries of results that can be used for downstream ecological analyses. Overall, MVP provides a standardized and reproducible pipeline for both extensive and robust characterization of viruses from large-scale sequencing data including metagenomes, metatranscriptomes, viromes and isolate genomes.
|
2025-04-22 |
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flumut
|
public |
A tool to search for molecular markers with potential impact on the biological characteristics of Influenza A viruses of the A(H5N1) subtype.
|
2025-04-22 |
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konezumiaid
|
public |
This is used for automatically designing gRNAs for genome editing by Target-AID.
|
2025-04-22 |
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segalign-galaxy
|
public |
SegAlign: A Scalable GPU-Based Whole Genome Aligner
|
2025-04-22 |
