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minigraph
|
public |
Proof-of-concept seq-to-graph mapper and graph generator
|
2024-12-13 |
|
ucsc-genepredcheck
|
public |
validate genePred files or tables
|
2024-12-13 |
|
ucsc-paranode
|
public |
version 12.18
|
2024-12-13 |
|
kssd
|
public |
K-mer substring space decomposition
|
2024-12-13 |
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r-singlecellnet
|
public |
SingleCellNet enables the classifcation of single cell RNA-Seq data across
species and platforms.
|
2024-12-13 |
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fpa
|
public |
Filter Pairwise Alignment filter long read mapping information to save disk space
|
2024-12-13 |
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pftools
|
public |
A generalized profile syntax for biomolecular sequence motifs and its function in automatic sequence interpretation.
|
2024-12-13 |
|
msamtools
|
public |
microbiome-related extension to samtools
|
2024-12-13 |
|
mason
|
public |
Mason is a collection of tools for the simulation of biological sequences.
|
2024-12-13 |
|
perl-statistics-caseresampling
|
public |
Efficient resampling and calculation of medians with confidence intervals
|
2024-12-13 |
|
ucsc-maftobigmaf
|
public |
Put ucsc standard maf file into bigMaf format
|
2024-12-13 |
|
bxtools
|
public |
Tools for analyzing 10X Genomics data
|
2024-12-13 |
|
stereogene
|
public |
StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data
|
2024-12-13 |
|
r-minionqc
|
public |
Quality control for MinION sequencing data
|
2024-12-13 |
|
plink2
|
public |
Whole genome association analysis toolset
|
2024-12-13 |
|
ucsc-axttopsl
|
public |
Convert axt to psl format
|
2024-12-13 |
|
srnamapper
|
public |
Mapping small RNA data to a genome.
|
2024-12-13 |
|
distle
|
public |
Fast distance matrix calculations on fasta and cgmlst files
|
2024-12-13 |
|
ucsc-fanoise
|
public |
Add noise to .fa file
|
2024-12-13 |
|
hi-corrector
|
public |
Remove biases from chromatin contact matrices generated by genome-wide proximity ligation assays, e.g. Hi-C and its variant TCC
|
2024-12-13 |
|
jarvis
|
public |
Efficient lossless compression of genomic sequences
|
2024-12-13 |
|
chromap
|
public |
Fast alignment and preprocessing of chromatin profiles
|
2024-12-13 |
|
ucsc-htmlcheck
|
public |
Do a little reading and verification of html file
|
2024-12-13 |
|
simba_pbg
|
public |
A customized PyTorch-BigGraph (PBG) package for `simba`
|
2024-12-13 |
|
comparems2
|
public |
A simple tool developed to compare, globally, all MS/MS spectra between two datasets (in Mascot Generic Format or MGF).
|
2024-12-13 |
|
migrate-n
|
public |
Population Genetics - Panmixia and Migration detection
|
2024-12-13 |
|
strike
|
public |
A program to evaluate protein multiple sequence alignments using a single protein structure.
|
2024-12-13 |
|
fastspar
|
public |
Rapid and scalable correlation estimation for compositional data
|
2024-12-13 |
|
ucsc-texthistogram
|
public |
Make a histogram in ascii
|
2024-12-13 |
|
simbac
|
public |
SimBac simulates bacterial genomes with the clonal genealogy under a coalescent model with recombination.
|
2024-12-13 |
|
dehomopolymerate
|
public |
Collapse homopolymer runs in FASTQ files
|
2024-12-13 |
|
hcluster_sg
|
public |
A tool for hierarchically clustering on a sparse graph
|
2024-12-13 |
|
ucsc-bigwigtowig
|
public |
Convert bigWig to wig. This will keep more of the same structure of the
|
2024-12-13 |
|
subread
|
public |
High-performance read alignment, quantification, and mutation discovery.
|
2024-12-13 |
|
ucsc-bigwigcluster
|
public |
Cluster bigWigs using a hacTree
|
2024-12-13 |
|
ucsc-bigwigaverageoverbed
|
public |
Compute average score of big wig over each bed, which may have introns.
|
2024-12-13 |
|
age-metasv
|
public |
optimal alignment of sequences with structural variants (SVs), modifiied for MetaSV integration
|
2024-12-13 |
|
raxml
|
public |
Phylogenetics - Randomized Axelerated Maximum Likelihood.
|
2024-12-13 |
|
ucsc-paranodestatus
|
public |
version 12.18
|
2024-12-13 |
|
weeder
|
public |
No Summary
|
2024-12-13 |
|
easel
|
public |
Easel is an ANSI C code library for computational analysis of biological sequences using probabilistic models.
|
2024-12-13 |
|
ucsc-pslpartition
|
public |
split PSL files into non-overlapping sets
|
2024-12-13 |
|
snap-aligner
|
public |
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
|
2024-12-13 |
|
slow5curl
|
public |
Tool for accessing remote BLOW5 files.
|
2024-12-13 |
|
pegasusio
|
public |
PegasusIO is the IO package for Pegasus.
|
2024-12-13 |
|
perl-dbd-pg
|
public |
DBI PostgreSQL interface
|
2024-12-13 |
|
bmfilter
|
public |
bmfilter is part of BMTagger aka Best Match Tagger, for removing human reads from metagenomics datasets
|
2024-12-13 |
|
ucsc-lavtoaxt
|
public |
Convert blastz lav file to an axt file (which includes sequence)
|
2024-12-13 |
|
dart
|
public |
Dart: a fast and accurate RNA-seq mapper
|
2024-12-13 |
|
pairsnp
|
public |
pairsnp calculates pairwise SNP distance matrices from multiple sequence alignment fasta files.
|
2024-12-13 |
