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wipertools
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public |
A suite of programs that drop or fix pesky lines in FASTQ files and that split FASTQ files into chunks or merge them.
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2024-11-25 |
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hifiadapterfilt
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public |
Convert .bam to .fastq and remove reads with remnant PacBio HiFi adapter sequences
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2024-11-25 |
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cobs
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public |
Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
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2024-11-25 |
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bioconda-repodata-patches
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public |
generate tweaks to index metadata, hosted separately from anaconda.org index
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2024-11-25 |
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dysgu
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public |
A collection of tools for calling structural variants using short or long reads
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2024-11-24 |
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samshee
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public |
A schema-agnostic parser and writer for illumina sample sheets v2.
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2024-11-24 |
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halfdeep
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public |
Automated detection of intervals covered at half depth by sequenced reads.
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2024-11-23 |
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quantms-utils
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public |
Python package with scripts and helpers for the quantms workflow.
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2024-11-23 |
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genodsp
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public |
General workbench for processing signals along genomic (chromosomal) intervals
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2024-11-23 |
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bbmap
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public |
BBMap is a short read aligner, as well as various other bioinformatic tools.
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2024-11-23 |
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chromap
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public |
Fast alignment and preprocessing of chromatin profiles
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2024-11-22 |
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fwdpy11
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public |
Forward-time population genetic simulation in Python.
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2024-11-22 |
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teloscope
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public |
A telomere annotation tools for genome assemblies
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2024-11-22 |
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scspectra
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public |
Supervised discovery of interpretable gene programs from single-cell data.
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2024-11-22 |
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meteor
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public |
Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems.
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2024-11-22 |
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influx_si
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public |
Metabolic flux and concentration estimation based on stable isotope labeling
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2024-11-22 |
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pharokka
|
public |
Fast Phage Annotation Program
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2024-11-22 |
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gafpack
|
public |
Convert alignments to pangenome variation graphs to coverage maps
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2024-11-22 |
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parsnp
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public |
Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection.
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2024-11-22 |
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resistify
|
public |
A resistance gene annotation tool
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2024-11-22 |
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biobb_mem
|
public |
Biobb_mem is the Biobb module for membrane structure analysis.
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2024-11-22 |
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polap
|
public |
POLAP: plant organelle long-read assembly pipeline
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2024-11-22 |
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deeplc
|
public |
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
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2024-11-22 |
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panta
|
public |
PanTA - pan-genome pipeline
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2024-11-22 |
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htsinfer
|
public |
HTSinfer infers metadata from Illumina high throughput sequencing (HTS) data
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2024-11-22 |
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dnaapler
|
public |
Reorients assembled microbial sequences
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2024-11-22 |
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deeplcretrainer
|
public |
Evaluating DeepLC performance and retraining prediction models.
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2024-11-22 |
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simug
|
public |
A simple, flexible, and powerful tool to simulate genome sequences with pre-defined or random genomic variants.
|
2024-11-22 |
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saccharis
|
public |
A CAZyme discovery tool. Easily create phylogenetic trees from FASTA files and CAZyme families.
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2024-11-22 |
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pangolin-data
|
public |
Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
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2024-11-22 |
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metabolights-utils
|
public |
MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes.
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2024-11-22 |
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ega-cryptor
|
public |
EGA Cryptor v2.0.0 is a tool designed to encrypt files compliant with the European Genome-phenome Archive (EGA)
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2024-11-22 |
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savana
|
public |
SAVANA: a somatic structural variant caller for long-read data
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2024-11-21 |
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r-stitch
|
public |
STITCH - Sequencing To Imputation Through Constructing Haplotypes.
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2024-11-21 |
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icfree-ml
|
public |
Design of experiments (DoE) and machine learning packages for the iCFree project
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2024-11-21 |
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artic
|
public |
ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore.
|
2024-11-21 |
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psm-utils
|
public |
Common utilities for parsing and handling peptide-spectrum matches and search engine results.
|
2024-11-21 |
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biobb_structure_utils
|
public |
Biobb_structure_utils is the Biobb module collection to modify or extract information from a PDB structure file.
|
2024-11-21 |
|
biobb_pytorch
|
public |
biobb_pytorch is the Biobb module collection to create and train ML & DL models.
|
2024-11-21 |
|
rmats
|
public |
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data.
|
2024-11-21 |
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ntedit
|
public |
Ultrafast, lightweight, scalable genome assembly polishing, and SNV detection & annotation
|
2024-11-21 |
|
pdivas
|
public |
PDIVAS: Pathogenicity predictor of Deep-Intronic Variants causing Aberrant Splicing
|
2024-11-21 |
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finemap
|
public |
Program for identifying causal SNPs and their effect sizes and heritability contributions
|
2024-11-21 |
|
pblat
|
public |
blat with multi-threads support
|
2024-11-21 |
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hmftools-amber
|
public |
Generates a tumor BAF file for use in PURPLE.
|
2024-11-21 |
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biobb_pmx
|
public |
Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions.
|
2024-11-21 |
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core-snp-filter
|
public |
Filtering sites (i.e. columns) in a FASTA-format whole-genome pseudo-alignment.
|
2024-11-21 |
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polypolish
|
public |
Polishing genome assemblies with short reads.
|
2024-11-21 |
|
pgrc
|
public |
A tool for compressing the DNA stream of FASTQ datasets.
|
2024-11-21 |
|
liana
|
public |
LIANA+: a one-stop-shop framework for cell-cell communication
|
2024-11-21 |
