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afpdb
|
public |
A Numpy-based PDB structure manipulation package
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2024-09-13 |
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cnv_facets
|
public |
Detect somatic copy number variants (CNV) in tumour-normal samples using next generation sequencing data
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2024-09-13 |
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bioconvert
|
public |
Convert between bioinformatics formats
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2024-09-13 |
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dockq
|
public |
A Quality Measure for Protein, Nucleic Acids and Small Ligand Docking Modelsc
|
2024-09-13 |
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hhsuite
|
public |
HH-suite3 for fast remote homology detection and deep protein annotation
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2024-09-13 |
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igv-reports
|
public |
Creates self-contained html pages for visual variant review with IGV (igv.js).
|
2024-09-13 |
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genomad
|
public |
Identification of mobile genetic elements
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2024-09-13 |
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bioconda-repodata-patches
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public |
generate tweaks to index metadata, hosted separately from anaconda.org index
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2024-09-13 |
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maxit
|
public |
MAXIT assists in the processing and curation of macromolecular structure data.
|
2024-09-13 |
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srnamapper
|
public |
Mapping small RNA data to a genome.
|
2024-09-13 |
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usalign
|
public |
Universal structure alignment of monomeric, complex proteins and nucleic acids
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2024-09-13 |
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anglerfish
|
public |
Anglerfish, a tool to demultiplex Illumina libraries from ONT data
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2024-09-13 |
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auspice
|
public |
Auspice is an open-source interactive tool for visualising phylogenomic data
|
2024-09-13 |
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gw
|
public |
View genomic sequencing data and vcf files
|
2024-09-12 |
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gencove
|
public |
Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis. This command-line interface can be used to easily access the Gencove API.
|
2024-09-12 |
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micom
|
public |
Microbial community modeling based on cobrapy.
|
2024-09-12 |
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jbrowse2
|
public |
The JBrowse 2 Genome Browser
|
2024-09-12 |
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irescue
|
public |
A tool to quantify transposable elements expression in scRNA-seq.
|
2024-09-12 |
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metabolights-utils
|
public |
MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes.
|
2024-09-12 |
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bcftools
|
public |
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations.
|
2024-09-12 |
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samtools
|
public |
Tools for dealing with SAM, BAM and CRAM files
|
2024-09-12 |
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microhapulator
|
public |
Tools for empirical microhaplotype calling, forensic interpretation, and simulation.
|
2024-09-12 |
|
htslib
|
public |
C library for high-throughput sequencing data formats.
|
2024-09-12 |
|
dysgu
|
public |
A collection of tools for calling structural variants using short or long reads
|
2024-09-12 |
|
nanosim
|
public |
NanoSim is a fast and scalable read simulator for Nanopore sequencing data.
|
2024-09-12 |
|
recognizer
|
public |
A tool for domain based annotation with the COG database
|
2024-09-12 |
|
strainy
|
public |
assembly-based metagenomic strain phasing using long reads
|
2024-09-12 |
|
methylmap
|
public |
Plotting tool for population-scale nucleotide modifications
|
2024-09-12 |
|
checkqc
|
public |
A simple program to parse Illumina NGS data and check it for quality criteria.
|
2024-09-12 |
|
r-mfassignr
|
public |
The MFAssignR package was designed for multi-element molecular formula (MF)
assignment of ultrahigh resolution mass spectrometry measurements.
A number of tools for internal mass recalibration, MF assignment, signal-to-noise evaluation,
and unambiguous formula selections are provided.
|
2024-09-12 |
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flumutdb
|
public |
Utility module for FluMut database.
|
2024-09-12 |
|
querynator
|
public |
Python package to query cancer variant databases
|
2024-09-12 |
|
pastml
|
public |
Ancestral character reconstruction and visualisation for rooted phylogenetic trees.
|
2024-09-12 |
|
strangepg
|
public |
Strange pangenome-scale interactive graph visualizer
|
2024-09-12 |
|
sam2pairwise
|
public |
sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read
|
2024-09-12 |
|
graphtyper
|
public |
Population-scale genotyping using pangenome graphs
|
2024-09-12 |
|
f5c
|
public |
An optimised re-implementation of the call-methylation and eventalign modules in Nanopolish.
|
2024-09-12 |
|
abyss
|
public |
Assembly By Short Sequences - a de novo, parallel, paired-end short read sequence assembler
|
2024-09-12 |
|
geofetch
|
public |
Downloads data and metadata from GEO and SRA and creates standard PEPs.
|
2024-09-11 |
|
callingcardstools
|
public |
An API and collection of cmd line tools to work with calling cards sequencing data
|
2024-09-11 |
|
gdc-client
|
public |
GDC Data Transfer Tool
|
2024-09-11 |
|
fastlin
|
public |
fastlin, ultra-fast MTBC lineage typing
|
2024-09-11 |
|
tribal
|
public |
TRIBAL is a package to infer B cell lineage trees from single-cell RNA sequencing data.
|
2024-09-11 |
|
snakemake-executor-plugin-slurm
|
public |
A Snakemake executor plugin for submitting jobs to a SLURM cluster.
|
2024-09-11 |
|
mgems
|
public |
mGEMS - sequencing data binning based on probabilistic classification
|
2024-09-11 |
|
saccharis
|
public |
A CAZyme discovery tool. Easily create phylogenetic trees from FASTA files and CAZyme families.
|
2024-09-11 |
|
msweep
|
public |
mSWEEP - bacterial community composition estimation from pseudoalignments
|
2024-09-11 |
|
schpl
|
public |
Hierarchical progressive learning pipeline for single-cell RNA-sequencing datasets
|
2024-09-11 |
|
mcl
|
public |
MCL - a cluster algorithm for graphs
|
2024-09-11 |
|
bustools
|
public |
bustools is a program for manipulating BUS files for single cell RNA-Seq datasets.
|
2024-09-11 |
