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Package Name Access Summary Updated
bioconductor-ruvseq public Remove Unwanted Variation from RNA-Seq Data 2024-12-31
bioconductor-minfi public Analyze Illumina Infinium DNA methylation arrays 2024-12-31
bioconductor-agimicrorna public Processing and Differential Expression Analysis of Agilent microRNA chips 2024-12-31
bioconductor-affycoretools public Functions useful for those doing repetitive analyses with Affymetrix GeneChips 2024-12-31
bioconductor-reportingtools public Tools for making reports in various formats 2024-12-31
bioconductor-chipseq public chipseq: A package for analyzing chipseq data 2024-12-30
bioconductor-girafe public Genome Intervals and Read Alignments for Functional Exploration 2024-12-30
bioconductor-chipseqr public Identifying Protein Binding Sites in High-Throughput Sequencing Data 2024-12-30
bioconductor-fastqcleaner public A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files 2024-12-30
bioconductor-amplican public Automated analysis of CRISPR experiments 2024-12-30
bioconductor-cner public CNE Detection and Visualization 2024-12-30
bioconductor-shortread public FASTQ input and manipulation 2024-12-30
bioconductor-rhdf5 public R Interface to HDF5 2024-12-30
bioconductor-inspect public Modeling RNA synthesis, processing and degradation with RNA-seq data 2024-12-30
bioconductor-imas public Integrative analysis of Multi-omics data for Alternative Splicing 2024-12-30
bioconductor-glmsparsenet public Network Centrality Metrics for Elastic-Net Regularized Models 2024-12-30
bioconductor-rtcgatoolbox public A new tool for exporting TCGA Firehose data 2024-12-30
bioconductor-eupathdb public Brings together annotation resources from the various EuPathDB databases (PlasmoDB, ToxoDB, TriTrypDB, etc.) and makes them available in R using the AnnotationHub framework. 2024-12-30
bioconductor-experimenthubdata public Add resources to ExperimentHub 2024-12-30
bioconductor-rgreat public GREAT Analysis - Functional Enrichment on Genomic Regions 2024-12-30
bioconductor-rcgh public Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data 2024-12-30
bioconductor-strandcheckr public Calculate strandness information of a bam file 2024-12-30
bioconductor-fdb.infiniummethylation.hg19 public Compiled HumanMethylation27 and HumanMethylation450 annotations 2024-12-30
bioconductor-fdb.infiniummethylation.hg18 public Compiled HumanMethylation27 and HumanMethylation450 annotations 2024-12-30
bioconductor-proloc public A unifying bioinformatics framework for spatial proteomics 2024-12-30
bioconductor-rcistarget public RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions 2024-12-30
bioconductor-meshr public Tools for conducting enrichment analysis of MeSH 2024-12-30
bioconductor-gostats public Tools for manipulating GO and microarrays 2024-12-30
bioconductor-ccpromise public PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data 2024-12-30
bioconductor-sigcheck public Check a gene signature's prognostic performance against random signatures, known signatures, and permuted data/metadata 2024-12-30
bioconductor-doppelgangr public Identify likely duplicate samples from genomic or meta-data 2024-12-30
bioconductor-edge public Extraction of Differential Gene Expression 2024-12-30
bioconductor-trigger public Transcriptional Regulatory Inference from Genetics of Gene ExpRession 2024-12-30
bioconductor-ballgown public Flexible, isoform-level differential expression analysis 2024-12-30
bioconductor-assign public Adaptive Signature Selection and InteGratioN (ASSIGN) 2024-12-30
bioconductor-rcas public RNA Centric Annotation System 2024-12-30
r-smartsva public Introduces a fast and efficient Surrogate Variable Analysis algorithm that captures variation of unknown sources (batch effects) for high-dimensional data sets. The algorithm is built on the 'irwsva.build' function of the 'sva' package and proposes a revision on it that achieves an order of magnitude faster running time while trading no accuracy loss in return. 2024-12-30
bioconductor-paa public PAA (Protein Array Analyzer) 2024-12-30
bioconductor-xde public XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression 2024-12-30
bioconductor-davidtiling public Data and analysis scripts for David, Huber et al. yeast tiling array paper 2024-12-30
bioconductor-cghmcr public Find chromosome regions showing common gains/losses 2024-12-30
r-tcga2stat public Automatically downloads and processes TCGA genomics and clinical data into a format convenient for statistical analyses in the R environment. 2024-12-30
bioconductor-rrbsdata public An RRBS data set with 12 samples and 10,000 simulated DMRs 2024-12-30
bioconductor-blma public BLMA: A package for bi-level meta-analysis 2024-12-30
bioconductor-transcriptr public An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification 2024-12-30
bioconductor-soggi public Visualise ChIP-seq, MNase-seq and motif occurrence as aggregate plots Summarised Over Grouped Genomic Intervals 2024-12-30
bioconductor-chipenrich public Gene Set Enrichment For ChIP-seq Peak Data 2024-12-30
bioconductor-dmrseq public Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing 2024-12-30
bioconductor-methinheritsim public Simulating Whole-Genome Inherited Bisulphite Sequencing Data 2024-12-30
bioconductor-scmeth public Functions to conduct quality control analysis in methylation data 2024-12-30
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