|
r-futile.options
|
public |
A scoped options management framework
|
2023-06-16 |
|
logbook
|
public |
A logging replacement for Python
|
2023-06-16 |
|
r-rainbow
|
public |
Functions and data sets for functional data display and outlier detection.
|
2023-06-16 |
|
python-levenshtein
|
public |
Python extension for computing string edit distances and similarities.
|
2023-06-16 |
|
r-future
|
public |
A Future API for R is provided. In programming, a future is an abstraction for a value that may be available at some point in the future. The state of a future can either be unresolved or resolved. As soon as it is resolved, the value is available. Futures are useful constructs in for instance concurrent evaluation, e.g. multicore parallel processing and distributed processing on compute clusters. The purpose of this package is to provide a lightweight interface for using futures in R. Functions 'future()' and 'value()' exist for creating futures and requesting their values. An infix assignment operator '%<=%' exists for creating futures whose values are accessible by the assigned variables (as promises). This package implements the synchronous "lazy" and "eager" futures, and the asynchronous "multicore" future (not on Windows). Additional types of futures are provided by other packages enhancing this package.
|
2023-06-16 |
|
r-lambda.r
|
public |
A language extension to efficiently write functional programs in R. Syntax extensions include multi-part function definitions, pattern matching, guard statements, built-in (optional) type safety.
|
2023-06-16 |
|
pycli
|
public |
Simple, object-oriented approach to Python CLI apps
|
2023-06-16 |
|
awscli
|
public |
Universal Command Line Environment for AWS
|
2023-06-16 |
|
r-globaloptions
|
public |
It provides more controls on the option values such as validation and filtering on the values, making options invisible or private.
|
2023-06-16 |
|
uritemplate
|
public |
Python implementation of RFC6570, URI Template, and can expand templates up to and including Level 4 in that specification.
|
2023-06-16 |
|
ansible
|
public |
Radically simple IT automation
|
2023-06-16 |
|
r-diagram
|
public |
Visualises simple graphs (networks) based on a transition matrix, utilities to plot flow diagrams, visualising webs, electrical networks, ... Support for the books "A practical guide to ecological modelling - using R as a simulation platform" by Karline Soetaert and Peter M.J. Herman (2009). Springer. and the book "Solving Differential Equations in R" by Karline Soetaert, Jeff Cash and Francesca Mazzia. Springer. Includes demo(flowchart), demo(plotmat), demo(plotweb)
|
2023-06-16 |
|
botocore
|
public |
No Summary
|
2023-06-16 |
|
rsa
|
public |
Pure-Python RSA implementation
|
2023-06-16 |
|
cramtools
|
public |
A set of Java tools and APIs for efficient compression of sequence read data
|
2023-06-16 |
|
requests-toolbelt
|
public |
A toolbelt of useful classes and functions to be used with python-requests
|
2023-06-16 |
|
java-jdk
|
public |
The Zulu OpenJDK build.
|
2023-06-16 |
|
glimmer
|
public |
Glimmer is a system for finding genes in microbial DNA
|
2023-06-16 |
|
libdb
|
public |
The Berkeley DB embedded database system.
|
2023-06-16 |
|
hall-lab-svtools
|
public |
Tools for processing and analyzing structural variants.
|
2023-06-16 |
|
r-venndiagram
|
public |
A set of functions to generate high-resolution Venn and Euler plots. Includes handling for several special cases, including two-case scaling, and extensive customization of plot shape and structure.
|
2023-06-16 |
|
qsignature
|
public |
qsignature is a simple and highly effective method for detecting potential sample mix-ups using distance measurements between SNP
|
2023-06-16 |
|
peakzilla
|
public |
Peakzilla identifies sites of enrichment and transcription factor binding sites from transcription factor ChIP-seq and ChIP-exo experiments at hight accuracy and resolution.
|
2023-06-16 |
|
pysftp
|
public |
A friendly face on SFTP
|
2023-06-16 |
|
pythonpy
|
public |
the swiss army knife of the command line
|
2023-06-16 |
|
mygene
|
public |
Python Client for MyGene.Info services.
|
2023-06-16 |
|
argh
|
public |
An unobtrusive argparse wrapper with natural syntax
|
2023-06-16 |
|
cyordereddict
|
public |
Cython implementation of Python's collections.OrderedDict
|
2023-06-16 |
|
seqbuster
|
public |
miRNA and isomiR annotation
|
2023-06-16 |
|
netifaces
|
public |
No Summary
|
2023-06-16 |
|
gat
|
public |
Genomic Association Tester
|
2023-06-16 |
|
pyutilib
|
public |
PyUtilib: A collection of Python utilities
|
2023-06-16 |
|
simplejson
|
public |
Simple, fast, extensible JSON encoder/decoder for Python
|
2023-06-16 |
|
r-signal
|
public |
A set of signal processing functions originally written for 'Matlab' and 'Octave'. Includes filter generation utilities, filtering functions, resampling routines, and visualization of filter models. It also includes interpolation functions.
|
2023-06-16 |
|
oncofuse
|
public |
Predicting oncogenic potential of gene fusions
|
2023-06-16 |
|
s3gof3r
|
public |
Fast, concurrent, streaming access to Amazon S3, including gof3r, a CLI
|
2023-06-16 |
|
hubward-all
|
public |
Meta-package for hubward including bedtools and UCSC tools
|
2023-06-16 |
|
theta2
|
public |
Estimate tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data
|
2023-06-16 |
|
r-viridis
|
public |
Port of the new 'matplotlib' color maps ('viridis' - the default -, 'magma', 'plasma' and 'inferno') to 'R'. 'matplotlib' <http://matplotlib.org/> is a popular plotting library for 'python'. These color maps are designed in such a way that they will analytically be perfectly perceptually-uniform, both in regular form and also when converted to black-and-white. They are also designed to be perceived by readers with the most common form of color blindness.
|
2023-06-16 |
|
p7zip
|
public |
p7zip is a quick port of 7z.exe and 7za.exe (command line version of 7zip, see www.7-zip.org ) for Unix.
|
2023-06-16 |
|
metaseq-all
|
public |
Meta-package for metaseq including bedtools and UCSC tools
|
2023-06-16 |
|
fisher
|
public |
Fast Fisher's Exact Test
|
2023-06-16 |
|
mysql-connector-c
|
public |
MySQL Connector/C, the C interface for communicating with MySQL servers.
|
2023-06-16 |
|
popt
|
public |
No Summary
|
2023-06-16 |
|
bcbio_monitor
|
public |
bcbio-monitor is an extension of bcbio-nextgen to visualize its progress
|
2023-06-16 |
|
mysqlclient
|
public |
Python interface to MySQL
|
2023-06-16 |
|
r-dendextend
|
public |
Offers a set of functions for extending dendrogram objects in R, letting you visualize and compare trees of hierarchical clusterings. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different dendrograms to one another.
|
2023-06-16 |
|
t_coffee
|
public |
A collection of tools for Computing, Evaluating and Manipulating Multiple Alignments of DNA, RNA, Protein Sequences and Structures.
|
2023-06-16 |
|
byobu
|
public |
Byobu is a GPLv3 open source text-based window manager and terminal multiplexer.
|
2023-06-16 |
|
metaseq
|
public |
Integrative analysis of high-thoughput sequencing data
|
2023-06-16 |
