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prestor
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public |
A prototype package for generating quality control plots from pRESTO output.
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2025-04-22 |
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r-alakazam
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public |
Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>, Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>.
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2025-04-22 |
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cassiopee
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public |
scan an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions
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2025-04-22 |
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sift4g
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public |
SIFT 4G is a faster version of SIFT that enables us to scale up and provide SIFT predictions for more organisms.
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2025-04-22 |
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rad_haplotyper
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public |
A program for building SNP haplotypes from RAD sequencing data
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2025-04-22 |
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commet
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public |
Comparing and combining multiple metagenomic datasets
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2025-04-22 |
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yanagiba
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public |
Filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore.
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2025-04-22 |
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bioconductor-hicrep
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public |
Measuring the reproducibility of Hi-C data
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2025-04-22 |
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takeabreak
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public |
tool that can detect inversion breakpoints directly from raw NGS reads, without the need of any reference genome and without de novo assembling the genomes
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2025-04-22 |
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nanolyse
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public |
Removing lambda DNA control reads from fastq dataset
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2025-04-22 |
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tantan
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public |
tantan masks simple regions (low complexity & short-period tandem repeats) in biological sequences.
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2025-04-22 |
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graphprot
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public |
GraphProt is a tool for modelling binding preferences of RNA-binding proteins from high-throughput experiments such as CLIP-seq and RNAcompete.
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2025-04-22 |
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bioconductor-copynumber
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public |
Segmentation of single- and multi-track copy number data by penalized least squares regression.
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2025-04-22 |
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perl-io-gzip
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public |
Perl extension to provide a PerlIO layer to gzip/gunzip
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2025-04-22 |
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kissplice
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public |
A local transcriptome assembler for SNPs, indels and AS events
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2025-04-22 |
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mapsembler2
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public |
Targeted assembly software
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2025-04-22 |
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mentalist
|
public |
The MLST pipeline developed by the PathOGiST research group.
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2025-04-22 |
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sis
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public |
A tool that uses mummer to scaffold small genomes.
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2025-04-22 |
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bio_hansel
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public |
Subtype Salmonella enterica genomes using 33bp k-mer typing schemes.
|
2025-04-22 |
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bioconductor-scran
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public |
Methods for Single-Cell RNA-Seq Data Analysis
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2025-04-22 |
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bioconductor-biseq
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public |
Processing and analyzing bisulfite sequencing data
|
2025-04-22 |
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bioconductor-globaltest
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public |
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
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2025-04-22 |
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bioconductor-simpleaffy
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public |
Very simple high level analysis of Affymetrix data
|
2025-04-22 |
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bioconductor-jaspar2014
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public |
Data package for JASPAR
|
2025-04-22 |
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perl-bio-cigar
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public |
Parse CIGAR strings and translate coordinates to/from reference/query
|
2025-04-22 |
