| Package Name | Access | Summary | Updated |
|---|---|---|---|
| assemblyutility | public | No Summary | 2025-08-21 |
| sparc | public | No Summary | 2025-08-21 |
| perl-findbin | public | Locate directory of original perl script. | 2025-08-20 |
| augustus | public | AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller. It can be used as an ab initio program, which means it bases its prediction purely on the sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources such as EST, MS/MS, protein alignments and synthenic genomic alignments. | 2025-08-20 |
| perl-bio-phylo | public | An object-oriented Perl toolkit for analyzing and manipulating phyloinformatic data. | 2025-08-20 |
| perl-bio-db-hts | public | Read files using HTSlib including BAM/CRAM, Tabix and BCF database files | 2025-08-20 |
| paml | public | A package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. | 2025-08-20 |
| bioconductor-dupradar | public | Assessment of duplication rates in RNA-Seq datasets | 2025-08-20 |
| ushuffle | public | uShuffle---a useful tool for shuffling biological sequences while preserving the k-let counts | 2025-08-20 |
| samblaster | public | Mark duplicates in and extract discordant and split reads from SAM files. | 2025-08-19 |
| perl-inline-c | public | C Language Support for Inline. | 2025-08-19 |
| dxpy | public | DNAnexus Platform API bindings for Python | 2025-08-19 |
| nanoplot | public | Plotting suite for long read sequencing data and alignments. | 2025-08-19 |
| fastq-tools | public | A collection of fastq manipulation scripts written in C for speed. | 2025-08-19 |
| seqkit | public | A cross-platform and ultrafast toolkit for FASTA/Q file manipulation. | 2025-08-19 |
| r-aroma.affymetrix | public | A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system. The only parameter that limits the number of chips that can be processed is the amount of available disk space. The Aroma Framework has successfully been used in studies to process tens of thousands of arrays. This package has actively been used since 2006. | 2025-08-19 |
| pbsim | public | No Summary | 2025-08-19 |
| r-phewas | public | Phenome Wide Association Studies (PheWAS) - Functions to perform Phenome Wide Association Studies (PheWAS). These functions include the conversion of ICD9 codes to PheWAS codes (v1.2), statistical analysis, and plotting. | 2025-08-19 |
| tgt | public | TextGridTools -- Read, write, and manipulate Praat TextGrid files | 2025-08-19 |
| perl-lwp-protocol-https | public | Provide https support for LWP::UserAgent. | 2025-08-19 |
| perl-mozilla-ca | public | Mozilla's CA cert bundle in PEM format. | 2025-08-19 |
| perl-text-format | public | Format text. | 2025-08-19 |
| perl-image-info | public | Extract meta information from image files. | 2025-08-19 |
| pyprophet | public | PyProphet: Semi-supervised learning and scoring of OpenSWATH results. | 2025-08-19 |
| r-aroma.core | public | Core methods and classes used by higher-level 'aroma.*' packages part of the Aroma Project, e.g. 'aroma.affymetrix' and 'aroma.cn'. | 2025-08-19 |
