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infinity
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public |
All-in-one infinity value for Python. Can be compared to any object.
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2023-06-16 |
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epydoc
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public |
Edward Loper's API Documentation Generation Tool
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2023-06-16 |
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wtforms-components
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public |
Additional fields, validators and widgets for WTForms.
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2023-06-16 |
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poretools
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public |
poretools: a toolkit for working with nanopore sequencing data from Oxford Nanopore
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2023-06-16 |
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r-svdialogs
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public |
Rapidly construct dialog boxes for your GUI, including an automatic function assistant
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2023-06-16 |
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phonenumbers
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public |
Python version of Google's common library for parsing, formatting, storing and validating international phone numbers.
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2023-06-16 |
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yanc
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public |
Yet another nose colorer
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2023-06-16 |
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pytest-timeout
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public |
py.test plugin to abort hanging tests
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2023-06-16 |
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stamp
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public |
A graphical software package for analyzing taxonomic and functional profiles.
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2023-06-16 |
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rseg
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public |
The RSEG software package is used to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3.
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2023-06-16 |
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r-amap
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public |
Tools for Clustering and Principal Component Analysis (With robust methods, and parallelized functions).
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2023-06-16 |
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r-bbmisc
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public |
No Summary
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2023-06-16 |
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bioconductor-mmdiff
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public |
This package detects statistically significant difference between read enrichment profiles in different ChIP-Seq samples. To take advantage of shape differences it uses Kernel methods (Maximum Mean Discrepancy, MMD).
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2023-06-16 |
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oligotyping
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public |
The oligotyping and minimum entropy decomposition (MED) pipeline for the analysis of marker gene amplicons
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2023-06-16 |
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r-sendmailr
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public |
Package contains a simple SMTP client which provides a portable solution for sending email, including attachment, from within R.
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2023-06-16 |
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r-checkmate
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public |
No Summary
|
2023-06-16 |
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r-compute.es
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public |
This package contains several functions for calculating the most widely used effect sizes (ES), along with their variances, confidence intervals and p-values. The output includes ES's of d (mean difference), g (unbiased estimate of d), r (correlation coefficient), z' (Fisher's z), and OR (odds ratio and log odds ratio). In addition, NNT (number needed to treat), U3, CLES (Common Language Effect Size) and Cliff's Delta are computed. This package uses recommended formulas as described in The Handbook of Research Synthesis and Meta-Analysis (Cooper, Hedges, & Valentine, 2009).
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2023-06-16 |
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r-gmd
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public |
GMD is a package for non-parametric distance measurement between two discrete frequency distributions.
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2023-06-16 |
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r-fail
|
public |
More comfortable interface to work with R data or source files in a key-value fashion.
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2023-06-16 |
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ms
|
public |
Generates random independent samples according to a simple Wright-Fisher neutral model.
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2023-06-16 |
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r-dbchip
|
public |
ChIP-seq differential binding
|
2023-06-16 |
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svgwrite
|
public |
A Python library to create SVG drawings.
|
2023-06-16 |
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svgutils
|
public |
Python SVG editor that allows to automatically create publication ready composite SVG figures.
|
2023-06-16 |
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sparsehash
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public |
An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed. These hashtable implementations are similar in API to SGI's hash_map class and the tr1 unordered_map class, but with different performance characteristics. It's easy to replace hash_map or unordered_map by sparse_hash_map or dense_hash_map in C++ code. They also contain code to serialize and unserialize from disk.
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2023-06-16 |
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screed
|
public |
Screed is a biological sequence parsing and storage/retrieval library for DNA and protein sequences.
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2023-06-16 |
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pynast
|
public |
The Python Nearest Alignment Space Termination tool
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2023-06-16 |
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ghc
|
public |
GHC is a state-of-the-art, open source, compiler and interactive environment for the functional language Haskell.
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2023-06-16 |
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rnacode
|
public |
RNAcode - Analyze the protein coding potential in multiple sequence alignments RNAcode relies on evolutionary signatures including synonymous/conservative mutations and conservation of the reading frame. It does not use any species specific sequence characteristics whatsoever and does not use any machine learning techniques.
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2023-06-16 |
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emperor
|
public |
Emperor a tool for the analysis and visualization of large microbial ecology datasets
|
2023-06-16 |
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ea-utils
|
public |
Command-line tools for processing biological sequencing data.
|
2023-06-16 |
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cogent
|
public |
COmparative GENomics Toolkit
|
2023-06-16 |
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bcbio-variation
|
public |
Toolkit to analyze genomic variation data, built on the GATK with Clojure
|
2023-06-16 |
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r-biom
|
public |
This is an R package for interfacing with the BIOM format.
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2023-06-16 |
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pyopt
|
public |
No Summary
|
2023-06-16 |
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ws4py
|
public |
WebSocket library for Python
|
2023-06-16 |
|
ete2
|
public |
Phylogenetic tree analyses and exploration
|
2023-06-16 |
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pyloh
|
public |
Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity
|
2023-06-16 |
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perl-extutils-makemaker
|
public |
Create a module Makefile
|
2023-06-16 |
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perl-bioperl-run
|
public |
BioPerl-Run - wrapper toolkit
|
2023-06-16 |
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fastuniq
|
public |
No Summary
|
2023-06-16 |
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sweepfinder2
|
public |
The BWA read mapper.
|
2023-06-16 |
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circexplorer
|
public |
A combined strategy to identify circular RNAs (circRNAs and ciRNAs)
|
2023-06-16 |
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perl-statistics-basic
|
public |
No Summary
|
2023-06-16 |
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perl-readonly
|
public |
Facility for creating read-only scalars, arrays, hashes
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2023-06-16 |
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perl-pathtools
|
public |
Tools for working with directory and file names
|
2023-06-16 |
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perl-cpan-meta
|
public |
the distribution metadata for a CPAN dist
|
2023-06-16 |
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rapclust
|
public |
Accurate, Fast and Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
|
2023-06-16 |
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trinculo
|
public |
A toolkit for carrying out genetic association for
multi-category phenotypes. Implements multinomial and ordinal
association incorporating covariates, conditional analysis,
empirical and non-emperical priors and fine-mapping.
|
2023-06-16 |
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smalt
|
public |
SMALT aligns DNA sequencing reads with a reference genome.
|
2023-06-16 |
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medusa-data-fusion
|
public |
Medusa is an approach to detect size-k modules of objects that, taken together,
appear most significant to another set of objects. It builds on collective
matrix factorization to derive different semantics, and it formulates the
growing of the modules as a submodular optimization program.
|
2023-06-16 |
