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bioconda / packages / r-ic10trainingdata 1.0.1

Training datasets for iC10; which implements the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. Genomic annotation for the training dataset has been obtained from Mark Dunning's lluminaHumanv3.db package.

Installers

Info: This package contains files in non-standard labels.
  • linux-64 v1.0.1
  • osx-64 v1.0.1

conda install

To install this package run one of the following:
conda install bioconda::r-ic10trainingdata
conda install bioconda/label/cf201901::r-ic10trainingdata

Description


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