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bioconductor-bitseq
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public |
Transcript expression inference and differential expression analysis for RNA-seq data
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2025-04-22 |
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bioconductor-birte
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public |
Expression levels of mRNA molecules are regulated by different processes, comprising inhibition or activation by transcription factors and post-transcriptional degradation by microRNAs. biRte uses regulatory networks of TFs, miRNAs and possibly other factors, together with mRNA, miRNA and other available expression data to predict the relative influence of a regulator on the expression of its target genes. Inference is done in a Bayesian modeling framework using Markov-Chain-Monte-Carlo. A special feature is the possibility for follow-up network reverse engineering between active regulators.
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2025-04-22 |
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bioconductor-birta
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public |
Bayesian Inference of Regulation of Transcriptional Activity
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2025-04-22 |
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bioconductor-biodist
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public |
Different distance measures
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2025-04-22 |
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bioconductor-beaddatapackr
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public |
Compression of Illumina BeadArray data
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2025-04-22 |
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bioconductor-badregionfinder
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public |
BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage
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2025-04-22 |
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bioconductor-bac
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public |
Bayesian Analysis of Chip-chip experiment
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2025-04-22 |
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bioconductor-agilp
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public |
Agilent expression array processing package
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2025-04-22 |
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perl-net-ftp-recursive
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public |
Recursive FTP Client class
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2025-04-22 |
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bioconductor-affyrnadegradation
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public |
Analyze and correct probe positional bias in microarray data due to RNA degradation
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2025-04-22 |
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bioconductor-affyilm
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public |
Linear Model of background subtraction and the Langmuir isotherm
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2025-04-22 |
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bioconductor-genomicinteractions
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public |
Utilities for handling genomic interaction data
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2025-04-22 |
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bioconductor-affycontam
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public |
structured corruption of affymetrix cel file data
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2025-04-22 |
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bioconductor-affycompatible
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public |
Affymetrix GeneChip software compatibility
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2025-04-22 |
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bioconductor-genominator
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public |
Analyze, manage and store genomic data
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2025-04-22 |
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quicktree
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public |
Fast implementation of the neighbour-joining phylogenetic inference method
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2025-04-22 |
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bioconductor-interactionset
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public |
Base Classes for Storing Genomic Interaction Data
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2025-04-22 |
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pygenometracks
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public |
Standalone program and library to plot beautiful genome browser tracks.
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2025-04-22 |
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bioconductor-genomegraphs
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public |
Plotting genomic information from Ensembl
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2025-04-22 |
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bioconductor-genomictuples
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public |
Representation and Manipulation of Genomic Tuples
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2025-04-22 |
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bioconductor-derfinderhelper
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public |
derfinder helper package
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2025-04-22 |
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bioconductor-rchemcpp
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public |
The Rchemcpp package implements the marginalized graph kernel and extensions, Tanimoto kernels, graph kernels, pharmacophore and 3D kernels suggested for measuring the similarity of molecules.
|
2025-04-22 |
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bioconductor-singlecellexperiment
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public |
S4 Classes for Single Cell Data
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2025-04-22 |
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bioconductor-rbiopaxparser
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public |
Parses BioPax files and represents them in R
|
2025-04-22 |
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bioconductor-chemminer
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public |
Cheminformatics Toolkit for R
|
2025-04-22 |
