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r-svgui
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public |
Functions to manage GUIs from R
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2023-06-16 |
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argutils
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public |
Functions to build matched argument parsers and config files
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2023-06-16 |
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wtforms-alchemy
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public |
Generates WTForms forms from SQLAlchemy models.
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2023-06-16 |
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eigen
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public |
Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
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2023-06-16 |
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r-corrplot
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public |
The corrplot package is a graphical display of a correlation matrix, confidence interval. It also contains some algorithms to do matrix reordering.
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2023-06-16 |
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r-fftwtools
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public |
Provides a wrapper for several FFTW functions. This package provides access to the two-dimensional FFT, the multivariate FFT, and the one-dimensional real to complex FFT using FFTW3. The package includes the functions fftw and mvfftw which are designed to mimic the functionality of the R functions fft and mvfft. The FFT functions have a parameter that allows them to not return the redundant complex conjugate when the input is real data.
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2023-06-16 |
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google-sparsehash
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public |
Several hash-map implementations.
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2023-06-16 |
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ant
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public |
Apache Ant is a Java library and command-line tool that help building software.
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2023-06-16 |
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r-ore
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public |
Provides an alternative to R's built-in functionality for handling regular expressions, based on the Oniguruma library. Offers first-class compiled regex objects, partial matching and function-based substitutions, amongst other features.
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2023-06-16 |
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kid
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public |
A simple and pythonic XML template language
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2023-06-16 |
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bioservices
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public |
Access to Biological Web Services from Python
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2023-06-16 |
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gnuplot
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public |
Gnuplot, plotting from command line
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2023-06-16 |
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suds-jurko
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public |
Lightweight SOAP client (Jurko's fork)
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2023-06-16 |
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samsifter
|
public |
Workflow editor for metagenomic analysis
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2023-06-16 |
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python-weblogo
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public |
Tool for creating sequence logos from biological sequence alignments
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2023-06-16 |
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screamingbackpack
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public |
ScreamingBackpack
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2023-06-16 |
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web.py
|
public |
web.py makes web apps
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2023-06-16 |
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ggplot
|
public |
An extremely un-pythonic package for doing exactly what ggplot2 does
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2023-06-16 |
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hurry.filesize
|
public |
A simple Python library for human readable file sizes (or anything sized in bytes).
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2023-06-16 |
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typing
|
public |
Type Hints for Python
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2023-06-16 |
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express
|
public |
eXpress is a streaming DNA/RNA sequence quantification tool.
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2023-06-16 |
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rdflib-jsonld
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public |
rdflib extension adding JSON-LD parser and serializer
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2023-06-16 |
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mhap
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public |
MHAP: MinHash Alignment Protocol. A tool for finding overlaps of long-read sequences (such as PacBio or Nanopore) in bioinformatics.
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2023-06-16 |
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ruffus
|
public |
Light-weight Python Computational Pipeline Management
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2023-06-16 |
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rdflib
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public |
RDFLib is a pure Python package work working with RDF
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2023-06-16 |
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denovogear
|
public |
A program to detect denovo-variants using next-generation sequencing data.
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2023-06-16 |
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cobra
|
public |
COBRApy is a package for constraint-based modeling of biological networks.
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2023-06-16 |
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yahmm
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public |
YAHMM is a HMM package for Python, implemented in Cython for speed.
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2023-06-16 |
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burrito-fillings
|
public |
burrito-fillings: burrito application controllers for bioinformatics
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2023-06-16 |
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pypore
|
public |
Pythonic/Cythonic Nanopore Translocation Analysis
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2023-06-16 |
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ciso8601
|
public |
Fast ISO8601 date time parser for Python written in C
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2023-06-16 |
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qiime-default-reference
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public |
Default reference data files for use with QIIME.
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2023-06-16 |
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shellescape
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public |
Shell escape a string to safely use it as a token in a shell command (backport of Python shlex.quote for Python versions 2.x & < 3.3)
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2023-06-16 |
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burrito
|
public |
Framework for wrapping and controlling command-line applications.
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2023-06-16 |
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pyqi
|
public |
pyqi: expose your interface
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2023-06-16 |
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r-vegan
|
public |
Ordination methods, diversity analysis and other functions for community and vegetation ecologists.
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2023-06-16 |
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glob2
|
public |
Version of the glob module that can capture patterns and supports recursive wildcards
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2023-06-16 |
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avro
|
public |
Avro is a serialization and RPC framework.
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2023-06-16 |
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collectl
|
public |
collectl monitoring tool
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2023-06-16 |
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spectacle
|
public |
This software implements a spectral learning algorithm for hidden Markov models for epigenomic data. Please see our paper for further details: Song, J and Chen, K. C. Spectacle: fast chromatin state annotation using spectral learning. Genome Biology, 16:33, 2015. http://genomebiology.com/2015/16/1/33
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2023-06-16 |
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backports.csv
|
public |
Backport of Python 3 csv module
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2023-06-16 |
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gevent
|
public |
Coroutine-based network library
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2023-06-16 |
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requests-cache
|
public |
Persistent cache for requests library
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2023-06-16 |
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skewer
|
public |
A fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
|
2023-06-16 |
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esmre
|
public |
Regular expression accelerator
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2023-06-16 |
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r-readmzxmldata
|
public |
Functions for reading mass spectrometry data in mzXML format.
|
2023-06-16 |
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swga
|
public |
Select primer sets for selective whole genome amplification (SWGA)
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2023-06-16 |
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r-readbrukerflexdata
|
public |
Reads data files acquired by Bruker Daltonics' matrix-assisted laser desorption/ionization-time-of-flight mass spectrometer of the *flex series.
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2023-06-16 |
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perl-devel-globaldestruction
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public |
Provides function returning the equivalent of ${^GLOBAL_PHASE} eq 'DESTRUCT' for older perls.
|
2023-06-16 |
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perl-authen-sasl-saslprep
|
public |
A Stringprep Profile for User Names and Passwords (RFC 4013)
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2023-06-16 |
