| Package Name | Access | Summary | Updated |
|---|---|---|---|
| r-histonehmm | public | histoneHMM is a software to analyse ChIP-seq data of histone modifications with broad genomic footprints like H3K27me3. It allows for calling modified regions in single samples as well as for calling differentially modified regions in a comparison of two samples | 2025-08-28 |
| abundancebin | public | No Summary | 2025-08-28 |
| perl-string-approx | public | No Summary | 2025-08-28 |
| transrate-tools | public | Command-line tools used by transrate for processing bam files. | 2025-08-28 |
| xunit-wrapper | public | Wrap python functions with a decorator to handle building XUnit reports | 2025-08-28 |
| tssar | public | No Summary | 2025-08-28 |
| canu | public | Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing. | 2025-08-28 |
| pipmir | public | No Summary | 2025-08-28 |
| seqmap | public | SeqMap is a tool for mapping large amount of oligonucleotide to the genome. | 2025-08-28 |
| damidseq_pipeline | public | An automated pipeline for processing DamID sequencing datasets. | 2025-08-28 |
| orthofinder | public | Accurate inference of orthogroups, orthologues, gene trees and rooted species tree made easy! | 2025-08-28 |
| repeatmasker | public | RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. | 2025-08-28 |
| gubbins | public | Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins. | 2025-08-28 |
| jcvi | public | Python utility libraries on genome assembly, annotation, and comparative genomics. | 2025-08-27 |
| openms | public | OpenMS is an open-source software C++ library for LC-MS data management and analyses. | 2025-08-24 |
| bioconductor-tfbstools | public | Software Package for Transcription Factor Binding Site (TFBS) Analysis. | 2025-08-22 |
| bioconductor-cner | public | CNE Detection and Visualization. | 2025-08-22 |
| alfred | public | BAM alignment statistics, feature counting and feature annotation | 2025-08-22 |
| skesa | public | Strategic Kmer Extension for Scrupulous Assemblies & Sequence Assembly Using Target Enrichment | 2025-08-21 |
| bioconductor-chromvar | public | Chromatin Variation Across Regions. | 2025-08-21 |
| macs2 | public | Model Based Analysis for ChIP-Seq data | 2025-08-21 |
| btrim | public | This tool is made to remove "tips" (short dead ends) from a compacted de Bruijn graph and more generally to remove sequencing errors. Used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336) | 2025-08-21 |
| disco | public | Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler. | 2025-08-21 |
| sparseassembler | public | No Summary | 2025-08-21 |
| dbg2olc | public | Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies | 2025-08-21 |
