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bioconductor-motifcounter
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public |
R package for analysing TFBSs in DNA sequences
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2025-04-22 |
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r-tcga2stat
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public |
Automatically downloads and processes TCGA genomics and clinical data into a format convenient for statistical analyses in the R environment.
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2025-04-22 |
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irida-sistr-results
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public |
Exports SISTR results available through IRIDA into a single report.
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2025-04-22 |
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r-adegenet
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public |
Toolset for the exploration of genetic and genomic data. Adegenet provides formal (S4) classes for storing and handling various genetic data, including genetic markers with varying ploidy and hierarchical population structure ('genind' class), alleles counts by populations ('genpop'), and genome-wide SNP data ('genlight'). It also implements original multivariate methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance and similarity measures, and several spatial methods. A range of both empirical and simulated datasets is also provided to illustrate various methods.
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2025-04-22 |
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downpore
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public |
Suite of tools for use in genome assembly and consensus.
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2025-04-22 |
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r-gwpcr
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public |
Implements the necessary distributions and parameter estimation procedures for a model of amplification and high-troughput sequencing. The model is based on a mechanistic model of PCR amplification as a Galton-Watson branching process, and on Poissonan sampling to model high-throughput sequencing.
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2025-04-22 |
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readseq
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public |
Read & reformat biosequences, Java command-line version
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2025-04-22 |
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bioconductor-sc3
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public |
Single-Cell Consensus Clustering
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2025-04-22 |
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snmf
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public |
Fast and efficient program for estimating individual admixture coefficients based on sparse non-negative matrix factorization and population genetics
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2025-04-22 |
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xtail
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public |
Genome-wide assessment of differential translations with ribosome profiling data
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2025-04-22 |
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dsh-bio
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public |
Tools for BED, FASTA, FASTQ, GAF, GFA1/2, GFF3, PAF, SAM, and VCF files
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2025-04-22 |
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bioconductor-genomeintervals
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public |
Operations on genomic intervals
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2025-04-22 |
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mirtop
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public |
Small RNA-seq annotation.
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2025-04-22 |
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hts-nim-tools
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public |
useful command-line tools written to show-case hts-nim
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2025-04-22 |
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clove
|
public |
CLOVE: Classification of genomic fusions into structural variation events.
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2025-04-22 |
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biolite
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public |
A lightweight bioinformatics framework with automated tracking of diagnostics and provenance.
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2025-04-22 |
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biolite-tools
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public |
C++ tools for biolite, a lightweight bioinformatics framework with automated tracking of diagnostics and provenance.
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2025-04-22 |
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dimspy
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public |
Python package for data processing of direct-infusion mass spectrometry-based metabolomics and lipidomics data
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2025-04-22 |
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gmap-fusion
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public |
GMAP-fusion is a utility for identifying candidate fusion transcripts based on transcript sequences reconstructed via RNA-Seq de novo transcriptome assembly.
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2025-04-22 |
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fusion-inspector
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public |
FusionInspector is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). FusionInspector assists in fusion transcript discovery by performing a supervised analysis of fusion predictions, attempting to recover and re-score evidence for such predictions. - https://github.com/FusionInspector/FusionInspector/wiki
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2025-04-22 |
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seroba
|
public |
SeroBA is a k-mer based Pipeline to identify the Serotype from Illumina NGS reads for given references.
|
2025-04-22 |
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r-biomark
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public |
Variable selection methods are provided for several classification methods: the lasso/elastic net, PCLDA, PLSDA, and several t-tests. Two approaches for selecting cutoffs can be used, one based on the stability of model coefficients under perturbation, and the other on higher criticism.
|
2025-04-22 |
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bioconductor-rtcga.mrna
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public |
mRNA datasets from The Cancer Genome Atlas Project
|
2025-04-22 |
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bioconductor-rtcga
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public |
The Cancer Genome Atlas Data Integration
|
2025-04-22 |
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perl-http-server-simple
|
public |
Lightweight HTTP server
|
2025-04-22 |
