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bioconductor-geneselector
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public |
The term 'GeneSelector' refers to a filter selecting those genes which are consistently identified as differentially expressed using various statistical procedures. 'Selected' genes are those present at the top of the list in various ranking methods (currently 14). In addition, the stability of the findings can be taken into account in the final ranking by examining perturbed versions of the original data set, e.g. by leaving samples, swapping class labels, generating bootstrap replicates or adding noise. Given multiple ranked lists, one can use aggregation methods in order to find a synthesis.
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2025-04-22 |
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bioconductor-pathrender
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public |
Render molecular pathways
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2025-04-22 |
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bioconductor-pbase
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public |
Manipulating and exploring protein and proteomics data
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2025-04-22 |
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bioconductor-cmap
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public |
Annotation data file for cMAP assembled using data from public data repositories
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2025-04-22 |
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bioconductor-pathvar
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public |
Methods to Find Pathways with Significantly Different Variability
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2025-04-22 |
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bioconductor-genetclassifier
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public |
Classify diseases and build associated gene networks using gene expression profiles
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2025-04-22 |
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bioconductor-minet
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public |
Mutual Information NETworks
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2025-04-22 |
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bioconductor-geneticsdesign
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public |
Functions for designing genetics studies
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2025-04-22 |
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bioconductor-prolocgui
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public |
Interactive visualisation of spatial proteomics data
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2025-04-22 |
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bioconductor-genogam
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public |
A GAM based framework for analysis of ChIP-Seq data
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2025-04-22 |
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bioconductor-pcagopromoter
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public |
pcaGoPromoter is used to analyze DNA micro array data
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2025-04-22 |
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bioconductor-pcpheno
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public |
Phenotypes and cellular organizational units
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2025-04-22 |
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bioconductor-genrank
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public |
Candidate gene prioritization based on convergent evidence
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2025-04-22 |
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bioconductor-quartpac
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public |
Identification of mutational clusters in protein quaternary structures.
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2025-04-22 |
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bioconductor-proloc
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public |
A unifying bioinformatics framework for spatial proteomics
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2025-04-22 |
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bioconductor-geosubmission
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public |
Prepares microarray data for submission to GEO
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2025-04-22 |
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bioconductor-graphpac
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public |
Identification of Mutational Clusters in Proteins via a Graph Theoretical Approach.
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2025-04-22 |
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bioconductor-rarevariantvis
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public |
A suite for analysis of rare genomic variants in whole genome sequencing data
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2025-04-22 |
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bioconductor-spacepac
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public |
Identification of Mutational Clusters in 3D Protein Space via Simulation.
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2025-04-22 |
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bioconductor-mlinterfaces
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public |
Uniform interfaces to R machine learning procedures for data in Bioconductor containers
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2025-04-22 |
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bioconductor-qsea
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public |
IP-seq data analysis and vizualization
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2025-04-22 |
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bioconductor-ipac
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public |
Identification of Protein Amino acid Clustering
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2025-04-22 |
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bioconductor-quaternaryprod
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public |
Computes the Quaternary Dot Product Scoring Statistic for Signed and Unsigned Causal Graphs
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2025-04-22 |
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bioconductor-phastcons100way.ucsc.hg19
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public |
Store UCSC phastCons conservation scores for the human genome (hg19) calculated from multiple alignments with other 99 vertebrate species.
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2025-04-22 |
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bioconductor-rariant
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public |
Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies
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2025-04-22 |
