bioconda / packages / bioconductor-genogam 2.6.0

A GAM based framework for analysis of ChIP-Seq data

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v2.6.0
  • osx-64  v2.6.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-genogam
conda install -c bioconda/label/gcc7 bioconductor-genogam
conda install -c bioconda/label/cf201901 bioconductor-genogam

Description

This package allows statistical analysis of genome-wide data with smooth functions using generalized additive models based on the implementation from the R-package 'mgcv'. It provides methods for the statistical analysis of ChIP-Seq data including inference of protein occupancy, and pointwise and region-wise differential analysis. Estimation of dispersion and smoothing parameters is performed by cross-validation. Scaling of generalized additive model fitting to whole chromosomes is achieved by parallelization over overlapping genomic intervals.

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