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tardis
|
public |
Pre-processor for bioinformatics cluster job submission
|
2025-04-22 |
|
satsuma2
|
public |
FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing
|
2025-04-22 |
|
samclip
|
public |
Filter SAM file for soft and hard clipped alignments
|
2025-04-22 |
|
taeper
|
public |
Simulate repeating a nanopore experiment.
|
2025-04-22 |
|
deblur
|
public |
Deblur is a greedy deconvolution algorithm based on known read error profiles.
|
2025-04-22 |
|
xatlas
|
public |
xAtlas is a fast and retrainable small variant caller that has been developed at the Baylor College of Medicine Human Genome Sequencing Center.
|
2025-04-22 |
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perl-perl-ostype
|
public |
Map Perl operating system names to generic types
|
2025-04-22 |
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perl-file-tee
|
public |
replicate data sent to a Perl stream
|
2025-04-22 |
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fseq
|
public |
F-Seq: A feature density estimator for high-throughput sequence tags
|
2025-04-22 |
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fusion-filter
|
public |
FusionFilter provides a common fusion-finding, filtering, and annotation framework for the Trinity Cancer Transcriptome Analysis Toolkit (CTAT).
|
2025-04-22 |
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libdeflate
|
public |
libdeflate is a library for fast, whole-buffer DEFLATE-based compression and decompression.
|
2025-04-22 |
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ncbi-ngs-sdk
|
public |
NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing.
|
2025-04-22 |
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bloocoo
|
public |
Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint. As an example, it can correct whole human genome re-sequencing reads at 70 x coverage with less than 4GB of memory.
|
2025-04-22 |
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perl-bio-mlst-check
|
public |
Multilocus sequence type checking using blast
|
2025-04-22 |
|
bioconductor-biocfilecache
|
public |
Manage Files Across Sessions
|
2025-04-22 |
|
libssw
|
public |
An SIMD Smith-Waterman C/C++/Python/Java Library for Use in Genomic Applications.
|
2025-04-22 |
|
perl-file-touch
|
public |
update file access and modification times, optionally creating files if needed
|
2025-04-22 |
|
perl-test-mockmodule
|
public |
Override subroutines in a module for unit testing
|
2025-04-22 |
|
perl-super
|
public |
control superclass method dispatch
|
2025-04-22 |
|
sloika
|
public |
Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling
|
2025-04-22 |
|
bioconductor-consensusov
|
public |
Gene expression-based subtype classification for high-grade serous ovarian cancer
|
2025-04-22 |
|
mamotif
|
public |
An integrative toolkit for detecting cell type-specific regulators
|
2025-04-22 |
|
motifscan
|
public |
A package for motif discovery and motif enrichment analysis
|
2025-04-22 |
|
scrappie
|
public |
Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group
|
2025-04-22 |
|
bioconductor-zfpkm
|
public |
A suite of functions to facilitate zFPKM transformations
|
2025-04-22 |
