| Package Name | Access | Summary | Updated |
|---|---|---|---|
| biopet-validatevcf | public | ValidateVcf validates a VCF file against a reference genomes. | 2025-04-22 |
| biopet-validateannotation | public | ValidateAnnotationvalidates whether an annotation file is correct. | 2025-04-22 |
| ldhelmet | public | Software program for statistical inference of fine-scale crossover recombination rates from population genetic data. | 2025-04-22 |
| biopet-vcffilter | public | This tool enables a user to filter VCF files. | 2025-04-22 |
| lightstringgraph | public | LightStringGraphs (LSG) is an external memory string graph construction tool. | 2025-04-22 |
| harvesttools | public | HarvestTools is a part of the Harvest software suite and provides file conversion between Gingr files and various standard text formats | 2025-04-22 |
| conus | public | CONUS is an implementation of simple stochastic context-free grammars for RNA secondary structure analysis.CONUS developed for exploring the consequences of different single sequence SCFG designs in predicting RNA secondary structure. | 2025-04-22 |
| perl-list-moreutils-xs | public | Provide the stuff missing in List::Util in XS | 2025-04-22 |
| lexmapr | public | A Lexicon and Rule-Based Tool for Translating Short Biomedical Specimen Descriptions into Semantic Web Ontology Terms | 2025-04-22 |
| plascope | public | PlaScope is a targeted approach to assess the plasmidome of bacteria. | 2025-04-22 |
| perl-version | public | Structured version objects | 2025-04-22 |
| perl-text-abbrev | public | abbrev - create an abbreviation table from a list | 2025-04-22 |
| perl-cpan-meta-yaml | public | Read and write a subset of YAML for CPAN Meta files | 2025-04-22 |
| perl-json-pp | public | JSON::XS compatible pure-Perl module. | 2025-04-22 |
| arboreto | public | Scalable gene regulatory network inference using tree-based ensemble regressors | 2025-04-22 |
| sequencetools | public | A tool (pileupCaller) for processing ancient DNA sequencing data | 2025-04-22 |
| mauve | public | Mauve is a system for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion | 2025-04-22 |
| perl-storable | public | persistence for Perl data structures | 2025-04-22 |
| grid | public | Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x). | 2025-04-22 |
| itsxpress | public | ITSxpress: Software to rapidly trim the Internally Transcribed Spacer (ITS) region from FASTQ files. | 2025-04-22 |
| icount | public | Computational pipeline for analysis of iCLIP data | 2025-04-22 |
| biopet-basecounter | public | BaseCounter counts the bases from genes and transcripts and outputs information on the counts in exonic and intronic regions as well as information on the counts on the sense and antisense strands. | 2025-04-22 |
| sshmm | public | ssHMM is an RNA motif finder that recovers sequence-structure motifs from RNA-binding protein data, such as CLIP-Seq data. | 2025-04-22 |
| gbsx | public | Toolkit for experimental design and demultiplexing genotyping by sequencing experiments | 2025-04-22 |
| anndata | public | An annotated data matrix. | 2025-04-22 |
