|
phenix
|
public |
Public Health England SNP calling pipeline
|
2025-04-22 |
|
metaquant
|
public |
Quantitative microbiome analysis
|
2025-04-22 |
|
scvi
|
public |
Single-cell Variational Inference
|
2025-04-22 |
|
perl-string-random
|
public |
Perl module to generate random strings based on a pattern
|
2025-04-22 |
|
ucsc-bedjointaboffset
|
public |
given a bed file and tab file where each have a column with matching values: first get the value of column0, the offset and line length from inTabFile. Then go over the bed file, use the name field and append its offset and length to the bed file as two separate fields. Write the new bed file to outBed.
|
2025-04-22 |
|
ucsc-endsinlf
|
public |
Check that last letter in files is end of line
|
2025-04-22 |
|
ucsc-gensub2
|
public |
version 12.18
|
2025-04-22 |
|
ucsc-para
|
public |
version 12.18
|
2025-04-22 |
|
ucsc-parahub
|
public |
parasol hub server version 12.18
|
2025-04-22 |
|
ucsc-websync
|
public |
download from https server, using files.txt on their end to get the list of files
|
2025-04-22 |
|
biopet-fastqsplitter
|
public |
This tool divides a fastq file into smaller fastq files, based on the number of output files specified.
|
2025-04-22 |
|
pmdtools
|
public |
Compute postmortem damage patterns and decontaminate ancient genomes
|
2025-04-22 |
|
biopet-scatterregions
|
public |
This tool breaks a reference or bed file into smaller scatter regions of equal size.
|
2025-04-22 |
|
pasa
|
public |
PASA, acronym for Program to Assemble Spliced Alignments (and pronounced 'pass-uh'), is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments.
|
2025-04-22 |
|
atactk
|
public |
A toolkit for working with ATAC-seq data.
|
2025-04-22 |
|
fastphylo
|
public |
Fastphylo is software project containing the implementations of the algorithms "Fast Computation of Distance Estimators" and "Fast Neighbor Joining".
|
2025-04-22 |
|
biopet-validatefastq
|
public |
This tool validates a FASTQ file.
|
2025-04-22 |
|
heinz
|
public |
The algorithm for identification of the optimal scoring subnetwork.
|
2025-04-22 |
|
perl-mce-shared
|
public |
MCE extension for sharing data supporting threads and processes
|
2025-04-22 |
|
flowcraft
|
public |
A Nextflow pipeline assembler for genomics. Pick your modules. Assemble them. Run the pipeline.
|
2025-04-22 |
|
fastq-anonymous
|
public |
Change the sequence of a fastq file to enable sharing of confidential information, for troubleshooting of tools.
|
2025-04-22 |
|
biopet-seqstat
|
public |
SeqStat is a package that contains tools to generate stats from a FastQ file, merge those stats for multiple samples, and validate the generated stats files.
|
2025-04-22 |
|
rdp_classifier
|
public |
Naive Bayesian classifier that can rapidly and accurately provide taxonomic assignments from domain to genus
|
2025-04-22 |
|
fasta-splitter
|
public |
Divides a large FASTA file into a set of smaller, approximately equally sized files
|
2025-04-22 |
|
perl-file-util
|
public |
Easy, versatile, portable file handling
|
2025-04-22 |
