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minepy
|
public |
minepy - Maximal Information-based Nonparametric Exploration
|
2025-03-25 |
|
shorah
|
public |
The Short Reads Assembly into Haplotypes (ShoRAH) program for inferring viral haplotypes from NGS data
|
2025-03-25 |
|
bioconductor-pcaexplorer
|
public |
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
|
2025-03-25 |
|
r-d3heatmap
|
public |
No Summary
|
2025-03-25 |
|
r-shinyace
|
public |
No Summary
|
2025-03-25 |
|
mobster
|
public |
NGS tool for detecting MEI and gene retrotransposition events in WGS and WES data, see Thung et al. Genome Biol. 2014 for more information.
|
2025-03-25 |
|
perl-tie-hash-indexed
|
public |
Ordered hashes for Perl
|
2025-03-25 |
|
damidseq_pipeline
|
public |
An automated pipeline for processing DamID sequencing datasets.
|
2025-03-25 |
|
music
|
public |
No Summary
|
2025-03-25 |
|
seq-gen
|
public |
Seq-Gen is a program that will simulate the evolution of nucleotide or amino acid sequences along a phylogeny, using common models of the substitution process.
|
2025-03-25 |
|
riboplot
|
public |
No Summary
|
2025-03-25 |
|
garnet
|
public |
UNKNOWN
|
2025-03-25 |
|
bioconductor-massspecwavelet
|
public |
Peak Detection for Mass Spectrometry data using wavelet-based algorithms
|
2025-03-25 |
|
r-rann
|
public |
No Summary
|
2025-03-25 |
|
r-waveslim
|
public |
No Summary
|
2025-03-25 |
|
r-cimpl
|
public |
No Summary
|
2025-03-25 |
|
obitools
|
public |
The OBITools package is a set of programs specifically designed for analyzing NGS data in a DNA metabarcoding context, taking into account taxonomic information
|
2025-03-25 |
|
ddrage
|
public |
Simulator for ddRADseq (double digest restriction site associated DNA sequencing) datasets. Generates reads (FASTQ format) that can be analyzed and validated using a ground truth file (YAML).
|
2025-03-25 |
|
pymot
|
public |
No Summary
|
2025-03-25 |
|
munkres
|
public |
No Summary
|
2025-03-25 |
|
python-omero
|
public |
Client library offering helper methods to access an OMERO server.
|
2025-03-25 |
|
zeroc-ice
|
public |
Ice is a comprehensive RPC framework that helps you network your software with minimal effort.
|
2025-03-25 |
|
disco
|
public |
Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler
|
2025-03-25 |
|
perl-image-exiftool
|
public |
ExifTool is a platform-independent Perl library plus a command-line application for reading, writing and editing meta information in a wide variety of files.
|
2025-03-25 |
|
ibdne
|
public |
No Summary
|
2025-03-25 |
|
ibdseq
|
public |
No Summary
|
2025-03-25 |
|
plastid
|
public |
plastid is a Python library for genomic analysis -- in particular, high-throughput sequencing data
|
2025-03-25 |
|
metavelvet-sl-pipeline
|
public |
No Summary
|
2025-03-25 |
|
jaffa
|
public |
JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts then searches
for gene fusions. This package contains the wrappers jaffa-direct, jaffa-assembly, and jaffa-hybrid.
You can pass the "refSeq" parameter in the environment variables JAFFA_REF_BASE. Otherwise, pass any paramters
to the wrappers as you would to the bpipe JAFFA_{method} call in the manual.
|
2025-03-25 |
|
probamconvert
|
public |
proBAMconvert is a conversion tool to convert common peptide identification files (mzIdentML, pepXML, mzTAB) to the proBAM or proBED format
|
2025-03-25 |
|
perl-datetime-format-strptime
|
public |
Parse and format strp and strf time patterns
|
2025-03-25 |
|
perl-list-compare
|
public |
No Summary
|
2025-03-25 |
|
perl-sub-name
|
public |
No Summary
|
2025-03-25 |
|
perl-text-template
|
public |
No Summary
|
2025-03-25 |
|
bpipe
|
public |
Bpipe - a tool for running and managing bioinformatics pipelines
|
2025-03-25 |
|
beast2
|
public |
BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences.
|
2025-03-25 |
|
addrg
|
public |
No Summary
|
2025-03-25 |
|
selectsequencesfrommsa
|
public |
Tool to select representative sequences from a multiple sequence alignment
|
2025-03-25 |
|
libidn
|
public |
No Summary
|
2025-03-25 |
|
rdock
|
public |
No Summary
|
2025-03-25 |
|
pybel
|
public |
PyBEL is a Python package for parsing and handling biological networks encoded in the Biological Expression Language (BEL).
|
2025-03-25 |
|
onto2nx
|
public |
A package for parsing ontologies in the OWL and OBO format into NetworkX graphs
|
2025-03-25 |
|
pullseq
|
public |
No Summary
|
2025-03-25 |
|
rna-seqc
|
public |
Fast, efficient RNA-Seq metrics for quality control and process optimization.
|
2025-03-25 |
|
primer3-py
|
public |
Python bindings for Primer3
|
2025-03-25 |
|
strelka
|
public |
Strelka calls somatic and germline small variants from mapped sequencing reads
|
2025-03-25 |
|
soapsplice
|
public |
No Summary
|
2025-03-25 |
|
jannovar-cli
|
public |
Java tool for performing annotation of VCF files
|
2025-03-25 |
|
ribodiff
|
public |
No Summary
|
2025-03-25 |
|
sniffles
|
public |
Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore).
|
2025-03-25 |
