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perl-snap
|
public |
SNAP calculates pairwise synonymous and nonsynonymous distances according to the Nei and Gojobori method for an alignment in table format.
|
2023-06-16 |
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phame
|
public |
A tool to derive SNP matrices and phylogenetic tree from raw reads, contigs, and full genomes.
|
2023-06-16 |
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delegation
|
public |
Simple implementation of the delegate pattern.
|
2023-06-16 |
|
mccortex
|
public |
De novo genome assembly and multisample variant calling
|
2023-06-16 |
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libarbdb
|
public |
ARB 6 Sequence Analysis Suite
|
2023-06-16 |
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genclust
|
public |
A genetic algorithm for clustering gene expression data.
|
2023-06-16 |
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arb-bio-tools
|
public |
ARB 6 Sequence Analysis Suite
|
2023-06-16 |
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arb-bio-devel
|
public |
ARB 6 Sequence Analysis Suite
|
2023-06-16 |
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python-rnacentral
|
public |
This tool exploits the RNAcentral public APIs to automatically retrieve sequences (converted to the FASTA format) and the related metadata, starting with one or a list of RNAcentral IDs
|
2023-06-16 |
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smcounter2
|
public |
smCounter2: an accurate low-frequency variant caller for targeted sequencing data with unique molecular identifiers
|
2023-06-16 |
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bandage
|
public |
Bandage - a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
|
2023-06-16 |
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ghost-tree
|
public |
ghost-tree is a bioinformatics tool that combines sequence data from two
genetic marker databases into one phylogenetic tree that can be used for
diversity analyses.
|
2023-06-16 |
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shannon
|
public |
A program for assembling transcripts from RNA-Seq data.
|
2023-06-16 |
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perl-math-random-mt-auto
|
public |
Auto-seeded Mersenne Twister PRNGs
|
2023-06-16 |
|
showit
|
public |
simple and sensible display of images in python
|
2023-06-16 |
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perl-business-isbn
|
public |
work with International Standard Book Numbers
|
2023-06-16 |
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perl-mac-systemdirectory
|
public |
Locate Mac OS X Standard System Directories
|
2023-06-16 |
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perl-sub-quote
|
public |
Efficient generation of subroutines via string eval
|
2023-06-16 |
|
perl-sys-info
|
public |
Fetch information from the host system
|
2023-06-16 |
|
perl-sys-info-driver-osx
|
public |
OSX driver for Sys::Info
|
2023-06-16 |
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perl-devel-assert
|
public |
assertions for Perl >= 5.14
|
2023-06-16 |
|
perl-sys-info-base
|
public |
Base class for Sys::Info
|
2023-06-16 |
|
perl-carp-clan
|
public |
Report errors from perspective of caller of a "clan" of modules
|
2023-06-16 |
|
regional
|
public |
simple manipulation and display of spatial regions in python
|
2023-06-16 |
|
perl-string-truncate
|
public |
a module for when strings are too long to be displayed in...
|
2023-06-16 |
|
focus
|
public |
FOCUS is an innovative and agile model to profile and report organisms present in metagenomic samples based on composition usage without sequence length dependencies.
|
2023-06-16 |
|
perl-sub-exporter-formethods
|
public |
helper routines for using Sub::Exporter to build methods
|
2023-06-16 |
|
perl-mac-propertylist
|
public |
work with Mac plists at a low level
|
2023-06-16 |
|
perl-business-isbn-data
|
public |
data pack for Business::ISBN
|
2023-06-16 |
|
fithic
|
public |
Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome architecture assays.
|
2023-06-16 |
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perl-object-insideout
|
public |
Comprehensive inside-out object support module
|
2023-06-16 |
|
perl-math-complex
|
public |
trigonometric functions
|
2023-06-16 |
|
perl-test-sys-info
|
public |
Centralized test suite for Sys::Info.
|
2023-06-16 |
|
perl-string-rewriteprefix
|
public |
rewrite strings based on a set of known prefixes
|
2023-06-16 |
|
perl-heap
|
public |
Perl extensions for keeping data partially sorted
|
2023-06-16 |
|
perl-xml-entities
|
public |
Mapping of XML entities to Unicode
|
2023-06-16 |
|
perl-module-list
|
public |
module `directory' listing
|
2023-06-16 |
|
r-raceid
|
public |
Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the StemID2 algorithm.
|
2023-06-16 |
|
perl-moosex-types-stringlike
|
public |
Moose type constraints for strings or string-like objects
|
2023-06-16 |
|
r-fateid
|
public |
Application of 'FateID' allows computation and visualization of cell fate bias for multi-lineage single cell transcriptome data. Herman, J.S., Sagar, Grün D. (2017) <DOI:10.1038/nmeth.4662>.
|
2023-06-16 |
|
perl-slurp
|
public |
Slurp entire files into variables
|
2023-06-16 |
|
perl-data-munge
|
public |
various utility functions
|
2023-06-16 |
|
perl-module-pluggable
|
public |
automatically give your module the ability to have plugins
|
2023-06-16 |
|
perl-file-copy-recursive-reduced
|
public |
Recursive copying of files and directories within Perl 5 toolchain
|
2023-06-16 |
|
perl-sub-info
|
public |
Tool for inspecting subroutines.
|
2023-06-16 |
|
perl-moosex-role-parameterized
|
public |
Moose roles with composition parameters
|
2023-06-16 |
|
perl-test-exec
|
public |
Test that some code calls exec without terminating testing
|
2023-06-16 |
|
r-fastqcr
|
public |
'FASTQC' is the most widely used tool for evaluating the quality of high throughput sequencing data. It produces, for each sample, an html report and a compressed file containing the raw data. If you have hundreds of samples, you are not going to open up each 'HTML' page. You need some way of looking at these data in aggregate. 'fastqcr' Provides helper functions to easily parse, aggregate and analyze 'FastQC' reports for large numbers of samples. It provides a convenient solution for building a 'Multi-QC' report, as well as, a 'one-sample' report with result interpretations.
|
2023-06-16 |
|
perl-return-multilevel
|
public |
return across multiple call levels
|
2023-06-16 |
|
perl-import-into
|
public |
Import packages into other packages
|
2023-06-16 |
