| Package Name | Access | Summary | Updated |
|---|---|---|---|
| pbsv | public | pbsv - PacBio structural variant (SV) calling and analysis tools | 2025-04-22 |
| perl-test-requiresinternet | public | Easily test network connectivity | 2025-04-22 |
| nim-falcon | public | Nim-based executables used by Falcon assembly workflow | 2025-04-22 |
| hulk | public | Histosketching Using Little Kmers | 2025-04-22 |
| xhmm | public | XHMM (eXome-Hidden Markov Model). | 2025-04-22 |
| centroid_rna_package | public | Collection of RNA secondary structure prediction programs based on gamma-centroid estimator (Hamada et. al. 2009) | 2025-04-22 |
| perl-test-memory-cycle | public | Verifies code hasn't left circular references | 2025-04-22 |
| perl-devel-cycle | public | Find memory cycles in objects | 2025-04-22 |
| perl-padwalker | public | play with other peoples' lexical variables | 2025-04-22 |
| novasplice | public | NovaSplice is a python tool to predict novel intronic splice sites from a given VCF file | 2025-04-22 |
| perl-test-fork | public | test code which forks | 2025-04-22 |
| genenotebook | public | A colleborative notebook for comparative genomics | 2025-04-22 |
| fastqe | public | A emoji based bioinformatics command line tool. | 2025-04-22 |
| perl-graphics-colorobject | public | convert between color spaces | 2025-04-22 |
| perl-graphics-colornames | public | defines RGB values for common color names | 2025-04-22 |
| perl-module-loaded | public | Mark modules as loaded/unloaded | 2025-04-22 |
| lordfast | public | Sensitive and Fast Alignment Search Tool for Long Read sequencing Data | 2025-04-22 |
| connectome-workbench | public | Connectome Workbench is an open source, freely available visualization and discovery tool used to map neuroimaging data, especially data generated by the Human Connectome Project | 2025-04-22 |
| slamdunk | public | Slamdunk is a software tool for SLAMseq data analysis. | 2025-04-22 |
| deepbinner | public | A signal-level demultiplexer for Oxford Nanopore reads. | 2025-04-22 |
| phantompeakqualtools | public | This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays. | 2025-04-22 |
| hotspot3d | public | This 3D proximity tool can be used to identify mutation hotspots from linear protein sequence and correlate the hotspots with known or potentially interacting domains, mutations, or drugs. Mutation-mutation and mutation-drug clusters can also be identified and viewed. | 2025-04-22 |
| wes-service-client | public | Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows; client support only | 2025-04-22 |
| deepsvr | public | DeepSVR stands for deep somatic variant refinement. It uses deep learning to classify real somatic and anomalous variants in paired tumor sequencing data. | 2025-04-22 |
| dropseq_tools | public | Package for the analysis of Drop-seq data developed by Jim Nemesh in the McCarroll Lab | 2025-04-22 |
