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indelfixer
|
public |
A sensitive aligner for 454, Illumina and PacBio data, employing a full Smith-Waterman alignment against a reference.
|
2025-03-25 |
|
peakachu
|
public |
Peak calling tool for CLIP-seq data.
|
2025-03-25 |
|
cmv
|
public |
A collection of tools for the visualisation of Hidden Markov Models (HMMV) and RNA-family models (CMV).
|
2025-03-25 |
|
mrbayes
|
public |
Bayesian Inference of Phylogeny
|
2025-03-25 |
|
r-rematch2
|
public |
Wrappers on 'regexpr' and 'gregexpr' to return the match results in tidy data frames.
|
2025-03-25 |
|
json_collect_data_source
|
public |
This tool is able to receive multiple datasets (optionally with their metadata) in a single query. As an extension of the galaxy-json-data-source tool (https://github.com/mdshw5/galaxy-json-data-source), it allows to handle archives (gz, bz2, tar, and zip) organizing their content in a collection.
|
2025-03-25 |
|
bioconductor-risa
|
public |
Converting experimental metadata from ISA-tab into Bioconductor data structures
|
2025-03-25 |
|
bioconductor-biocviews
|
public |
Categorized views of R package repositories
|
2025-03-25 |
|
w4mclstrpeakpics
|
public |
Visualize W4M sample-cluster peaks - Produce a figure to assess the similarities and differences among peaks in a cluster of samples using XCMS-preprocessed data files as input. MIT Licence allows redistribution.
|
2025-03-25 |
|
dxpy
|
public |
DNAnexus Platform API bindings for Python
|
2025-03-25 |
|
fusepy
|
public |
Simple ctypes bindings for FUSE
|
2025-03-25 |
|
r-microseq
|
public |
Basic functions for microbial sequence data analysis.
|
2025-03-25 |
|
bioconductor-profia
|
public |
Preprocessing of FIA-HRMS data
|
2025-03-25 |
|
r-maxlik
|
public |
Functions for Maximum Likelihood (ML) estimation and non-linear optimization, and related tools. It includes a unified way to call different optimizers, and classes and methods to handle the results from the ML viewpoint. It also includes a number of convenience tools for testing and developing your own models.
|
2025-03-25 |
|
gdsctools
|
public |
Set of tools and pipelines to analyse GDSC data (cancerrxgene.org)
|
2025-03-25 |
|
r-misctools
|
public |
Miscellaneous small tools and utilities. Many of them facilitate the work with matrices, e.g. inserting rows or columns, creating symmetric matrices, or checking for semidefiniteness. Other tools facilitate the work with regression models, e.g. extracting the standard errors, obtaining the number of (estimated) parameters, or calculating R-squared values.
|
2025-03-25 |
|
r-minpack.lm
|
public |
The nls.lm function provides an R interface to lmder and lmdif from the MINPACK library, for solving nonlinear least-squares problems by a modification of the Levenberg-Marquardt algorithm, with support for lower and upper parameter bounds. The implementation can be used via nls-like calls using the nlsLM function.
|
2025-03-25 |
|
transrate-tools
|
public |
Command-line tools used by transrate for processing bam files.
|
2025-03-25 |
|
crisper_recognition_tool
|
public |
A tool for automatic detection of clustered regularly interspaced palindromic repeats (CRISPR).
|
2025-03-25 |
|
plant_tribes_gene_family_integrator
|
public |
Gene family integrator pipeline
|
2025-03-25 |
|
plant_tribes_gene_family_phylogeny_builder
|
public |
Gene family phylogeny builder pipeline
|
2025-03-25 |
|
plant_tribes_kaks_analysis
|
public |
KaKs Analysis pipeline
|
2025-03-25 |
|
plant_tribes_gene_family_aligner
|
public |
Gene family aligner pipeline
|
2025-03-25 |
|
singularity
|
public |
Singularity - Enabling users to have full control of their environment
|
2025-03-25 |
|
libffi
|
public |
A Portable Foreign Function Interface Library
|
2025-03-25 |
|
bctools
|
public |
Tools for handling barcodes in NGS data.
|
2025-03-25 |
|
plant_tribes_assembly_post_processor
|
public |
Transcriptome assembly post processing pipeline
|
2025-03-25 |
|
transtermhp
|
public |
TransTermHP finds rho-independent transcription terminators in bacterial genomes
|
2025-03-25 |
|
pvacseq
|
public |
Personalized Variant Antigens by Cancer Sequencing (pVAC-Seq)
|
2025-03-25 |
|
genologics
|
public |
Python interface to the GenoLogics LIMS (Laboratory Information Management System) server via its REST API.
|
2025-03-25 |
|
smallgenomeutilities
|
public |
A collection of scripts that are useful for dealing with viral RNA NGS data.
|
2025-03-25 |
|
ngshmmalign
|
public |
No Summary
|
2025-03-25 |
|
clinod
|
public |
No Summary
|
2025-03-25 |
|
glimmerhmm
|
public |
No Summary
|
2025-03-25 |
|
r-pack
|
public |
No Summary
|
2025-03-25 |
|
bioconductor-scan.upc
|
public |
Single-channel array normalization (SCAN) and Universal exPression Codes (UPC)
|
2025-03-25 |
|
bioconductor-oligo
|
public |
Preprocessing tools for oligonucleotide arrays
|
2025-03-25 |
|
bioconductor-oligoclasses
|
public |
Classes for high-throughput arrays supported by oligo and crlmm
|
2025-03-25 |
|
snns
|
public |
No Summary
|
2025-03-25 |
|
tadarida-d
|
public |
Tadarida-D (Toolbox for Animal Detection on Acoustic Recordings - Detection and Feature extraction part) for Galaxy use.
|
2025-03-25 |
|
effectivet3
|
public |
No Summary
|
2025-03-25 |
|
bioconductor-iwtomics
|
public |
Interval-Wise Testing for Omics Data
|
2025-03-25 |
|
twopaco
|
public |
A fast constructor of the compressed de Bruijn graph from many genomes.
|
2025-03-25 |
|
perl-pod-coverage
|
public |
No Summary
|
2025-03-25 |
|
perl-pod-simple
|
public |
No Summary
|
2025-03-25 |
|
perl-pod-escapes
|
public |
No Summary
|
2025-03-25 |
|
perl-file-temp
|
public |
No Summary
|
2025-03-25 |
|
perl-encode
|
public |
allows you to write your script in non-ASCII and non-UTF-8
|
2025-03-25 |
|
perl-pod-parser
|
public |
No Summary
|
2025-03-25 |
|
perl-test
|
public |
No Summary
|
2025-03-25 |
