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bioconda / packages

Package Name Access Summary Updated
apoc public Large-scale structural comparison of protein pockets 2025-03-25
perl-bio-eutilities public Webagent which interacts with and retrieves data from NCBI eUtils. 2025-03-25
perl-tie-log4perl public Tie a filehandle to log via Log4perl 2025-03-25
intervene public A tool for intersection of multiple gene or genomic region sets and visualization as venn diagrams, UpSet plots or pariwaise heatmaps 2025-03-25
hlaprofiler public HLAProfiler uses k-mer profiles to predict HLA types from paired-end RNA-seq data. 2025-03-25
xxhash public Python binding for xxHash 2025-03-25
xdg public Variables defined by the XDG Base Directory Specification 2025-03-25
kraken-ea public Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. This is a modified version allowing for splitting of fastq files based on read classifications. 2025-03-25
netreg public netReg fits linear regression models using network-penalization. 2025-03-25
arb-bio public ARB 6 Sequence Analysis Suite 2025-03-25
phyml public Phylogenetic estimation using (Maximum) Likelihood 2025-03-25
indelfixer public A sensitive aligner for 454, Illumina and PacBio data, employing a full Smith-Waterman alignment against a reference. 2025-03-25
peakachu public Peak calling tool for CLIP-seq data. 2025-03-25
cmv public A collection of tools for the visualisation of Hidden Markov Models (HMMV) and RNA-family models (CMV). 2025-03-25
mrbayes public Bayesian Inference of Phylogeny 2025-03-25
r-rematch2 public Wrappers on 'regexpr' and 'gregexpr' to return the match results in tidy data frames. 2025-03-25
json_collect_data_source public This tool is able to receive multiple datasets (optionally with their metadata) in a single query. As an extension of the galaxy-json-data-source tool (https://github.com/mdshw5/galaxy-json-data-source), it allows to handle archives (gz, bz2, tar, and zip) organizing their content in a collection. 2025-03-25
bioconductor-risa public Converting experimental metadata from ISA-tab into Bioconductor data structures 2025-03-25
bioconductor-biocviews public Categorized views of R package repositories 2025-03-25
w4mclstrpeakpics public Visualize W4M sample-cluster peaks - Produce a figure to assess the similarities and differences among peaks in a cluster of samples using XCMS-preprocessed data files as input. MIT Licence allows redistribution. 2025-03-25
fusepy public Simple ctypes bindings for FUSE 2025-03-25
r-microseq public Basic functions for microbial sequence data analysis. 2025-03-25
bioconductor-profia public Preprocessing of FIA-HRMS data 2025-03-25
r-maxlik public Functions for Maximum Likelihood (ML) estimation and non-linear optimization, and related tools. It includes a unified way to call different optimizers, and classes and methods to handle the results from the ML viewpoint. It also includes a number of convenience tools for testing and developing your own models. 2025-03-25
gdsctools public Set of tools and pipelines to analyse GDSC data (cancerrxgene.org) 2025-03-25
r-misctools public Miscellaneous small tools and utilities. Many of them facilitate the work with matrices, e.g. inserting rows or columns, creating symmetric matrices, or checking for semidefiniteness. Other tools facilitate the work with regression models, e.g. extracting the standard errors, obtaining the number of (estimated) parameters, or calculating R-squared values. 2025-03-25
r-minpack.lm public The nls.lm function provides an R interface to lmder and lmdif from the MINPACK library, for solving nonlinear least-squares problems by a modification of the Levenberg-Marquardt algorithm, with support for lower and upper parameter bounds. The implementation can be used via nls-like calls using the nlsLM function. 2025-03-25
transrate-tools public Command-line tools used by transrate for processing bam files. 2025-03-25
crisper_recognition_tool public A tool for automatic detection of clustered regularly interspaced palindromic repeats (CRISPR). 2025-03-25
plant_tribes_gene_family_integrator public Gene family integrator pipeline 2025-03-25
plant_tribes_gene_family_phylogeny_builder public Gene family phylogeny builder pipeline 2025-03-25
plant_tribes_kaks_analysis public KaKs Analysis pipeline 2025-03-25
plant_tribes_gene_family_aligner public Gene family aligner pipeline 2025-03-25
singularity public Singularity - Enabling users to have full control of their environment 2025-03-25
libffi public A Portable Foreign Function Interface Library 2025-03-25
bctools public Tools for handling barcodes in NGS data. 2025-03-25
plant_tribes_assembly_post_processor public Transcriptome assembly post processing pipeline 2025-03-25
transtermhp public TransTermHP finds rho-independent transcription terminators in bacterial genomes 2025-03-25
pvacseq public Personalized Variant Antigens by Cancer Sequencing (pVAC-Seq) 2025-03-25
genologics public Python interface to the GenoLogics LIMS (Laboratory Information Management System) server via its REST API. 2025-03-25
smallgenomeutilities public A collection of scripts that are useful for dealing with viral RNA NGS data. 2025-03-25
ngshmmalign public No Summary 2025-03-25
clinod public No Summary 2025-03-25
glimmerhmm public No Summary 2025-03-25
r-pack public No Summary 2025-03-25
bioconductor-scan.upc public Single-channel array normalization (SCAN) and Universal exPression Codes (UPC) 2025-03-25
bioconductor-oligo public Preprocessing tools for oligonucleotide arrays 2025-03-25
bioconductor-oligoclasses public Classes for high-throughput arrays supported by oligo and crlmm 2025-03-25
snns public No Summary 2025-03-25
tadarida-d public Tadarida-D (Toolbox for Animal Detection on Acoustic Recordings - Detection and Feature extraction part) for Galaxy use. 2025-03-25

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