| Package Name | Access | Summary | Updated |
|---|---|---|---|
| krakenuniq | public | Metagenomics classifier with unique k-mer counting for more specific results | 2025-04-22 |
| python-rnacentral | public | This tool exploits the RNAcentral public APIs to automatically retrieve sequences (converted to the FASTA format) and the related metadata, starting with one or a list of RNAcentral IDs | 2025-04-22 |
| tigmint | public | Correct misassemblies using linked or long reads | 2025-04-22 |
| bioconductor-elmer | public | Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes | 2025-04-22 |
| bioconductor-elmer.data | public | Data for the ELMER package | 2025-04-22 |
| r-seurat-scripts | public | A set of wrappers for individual components of the Seurat package. Functions R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages. | 2025-04-22 |
| r-workflowscriptscommon | public | Common functions for making R function wapper scripts. Functions in R packages are hard to call when building workflows outside of R, so this package is used by other packages (e.g. r-seurat-scripts) to add sets of simple wrappers with robust argument parsing. | 2025-04-22 |
| scnic | public | SCNIC: Sparse Cooccurence Network Investigation for Compositional data | 2025-04-22 |
| perl-mac-systemdirectory | public | Locate Mac OS X Standard System Directories | 2025-04-22 |
| transgenescan | public | Software tool for finding genes in assembled transcripts from metatranscriptomic sequences. | 2025-04-22 |
| perl-sub-quote | public | Efficient generation of subroutines via string eval | 2025-04-22 |
| perl-heap | public | Perl extensions for keeping data partially sorted | 2025-04-22 |
| fithic | public | Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome architecture assays. | 2025-04-22 |
| teloclip | public | A tool for the recovery of unassembled telomeres from soft-clipped read alignments. | 2025-04-22 |
| perl-sys-info | public | Fetch information from the host system | 2025-04-22 |
| perl-mac-propertylist | public | work with Mac plists at a low level | 2025-04-22 |
| perl-xml-entities | public | Mapping of XML entities to Unicode | 2025-04-22 |
| perl-math-random-mt-auto | public | Auto-seeded Mersenne Twister PRNGs | 2025-04-22 |
| perl-parallel-loops | public | Execute loops using parallel forked subprocesses | 2025-04-22 |
| perl-object-insideout | public | Comprehensive inside-out object support module | 2025-04-22 |
| perl-math-bigint | public | Arbitrary size floating point math package | 2025-04-22 |
| perl-math-complex | public | trigonometric functions | 2025-04-22 |
| crux-toolkit | public | A cross-platform suite of analysis tools for interpreting protein mass spectrometry data | 2025-04-22 |
| focus | public | FOCUS is an innovative and agile model to profile and report organisms present in metagenomic samples based on composition usage without sequence length dependencies. | 2025-04-22 |
| perl-devel-assert | public | assertions for Perl >= 5.14 | 2025-04-22 |
