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cortexpy
|
public |
A Python API for manipulating (Mc)Cortex de novo assembly graph and link data
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2025-04-22 |
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bufet
|
public |
Tool that performs the unbiased miRNA functional enrichment analysis (Bleazard et al.) requiring significantly reduced excution times (less than 10 minutes for 1 million iterations).
|
2025-04-22 |
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thermorawfileparser
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public |
Wrapper around the .net (C#) ThermoFisher ThermoRawFileReader library for running on Linux with mono
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2025-04-22 |
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bandage
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public |
Bandage - a Bioinformatics Application for Navigating De novo Assembly Graphs Easily.
|
2025-04-22 |
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stream
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public |
STREAM-Single-cell Trajectories Reconstruction, Exploration And Mapping
|
2025-04-22 |
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arb-bio-devel
|
public |
ARB 6 Sequence Analysis Suite
|
2025-04-22 |
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arb-bio-tools
|
public |
ARB 6 Sequence Analysis Suite
|
2025-04-22 |
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libarbdb
|
public |
ARB 6 Sequence Analysis Suite
|
2025-04-22 |
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ghost-tree
|
public |
ghost-tree is a bioinformatics tool that combines sequence data from two
genetic marker databases into one phylogenetic tree that can be used for
diversity analyses.
|
2025-04-22 |
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gatb
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public |
The Genome Analysis Toolbox with de-Bruijn graph
|
2025-04-22 |
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bioconductor-singlecellexperiment-scripts
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public |
A set of wrappers for operations associated with the SingleCellExperiment package. Functions in R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.
|
2025-04-22 |
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biobb_md
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public |
Deprecated Package: biobb_md is no longer maintained and has been superseded by the biobb_gromacs package. Biobb_md is the Biobb module collection to perform molecular dynamics simulations.
|
2025-04-22 |
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hicmatrix
|
public |
Library to manage Hi-C matrices for HiCExplorer and pyGenomeTracks
|
2025-04-22 |
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smcounter2
|
public |
smCounter2: an accurate low-frequency variant caller for targeted sequencing data with unique molecular identifiers
|
2025-04-22 |
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solexaqa
|
public |
Quality statistics and visual representations for second-generation sequencing data
|
2025-04-22 |
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shannon
|
public |
A program for assembling transcripts from RNA-Seq data.
|
2025-04-22 |
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genclust
|
public |
A genetic algorithm for clustering gene expression data.
|
2025-04-22 |
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pyega3
|
public |
EGA python client
|
2025-04-22 |
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krakenuniq
|
public |
Metagenomics classifier with unique k-mer counting for more specific results
|
2025-04-22 |
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python-rnacentral
|
public |
This tool exploits the RNAcentral public APIs to automatically retrieve sequences (converted to the FASTA format) and the related metadata, starting with one or a list of RNAcentral IDs
|
2025-04-22 |
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tigmint
|
public |
Correct misassemblies using linked or long reads
|
2025-04-22 |
|
bioconductor-elmer
|
public |
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes
|
2025-04-22 |
|
bioconductor-elmer.data
|
public |
Data for the ELMER package
|
2025-04-22 |
|
r-seurat-scripts
|
public |
A set of wrappers for individual components of the Seurat package. Functions R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.
|
2025-04-22 |
|
r-workflowscriptscommon
|
public |
Common functions for making R function wapper scripts. Functions in R packages are hard to call when building workflows outside of R, so this package is used by other packages (e.g. r-seurat-scripts) to add sets of simple wrappers with robust argument parsing.
|
2025-04-22 |
