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spaln
|
public |
Map and align a set of cDNA/EST or protein sequences onto a genome
|
2024-10-24 |
|
gmap
|
public |
Genomic mapping and alignment program for mRNA and EST sequences.
|
2024-10-24 |
|
vsearch
|
public |
A versatile open source tool for metagenomics (USEARCH alternative)
|
2024-10-24 |
|
snippy
|
public |
Rapid bacterial SNP calling and core genome alignments
|
2024-10-24 |
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tantan
|
public |
tantan masks simple regions (low complexity & short-period tandem repeats) in biological sequences.
|
2024-10-24 |
|
last
|
public |
LAST finds & aligns related regions of sequences.
|
2024-10-24 |
|
hyphy
|
public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
|
2024-10-22 |
|
viennarna
|
public |
ViennaRNA package -- RNA secondary structure prediction and comparison
|
2024-10-22 |
|
trim-galore
|
public |
Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control
|
2024-10-22 |
|
perl-excel-writer-xlsx
|
public |
Create a new file in the Excel 2007+ XLSX format.
|
2024-10-22 |
|
abyss
|
public |
Assembly By Short Sequences - a de novo, parallel, paired-end short read sequence assembler.
|
2024-10-21 |
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diamond
|
public |
Accelerated BLAST compatible local sequence aligner
|
2024-10-21 |
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centrifuge
|
public |
Classifier for metagenomic sequences. Supports classifier scripts
|
2024-10-21 |
|
sevenbridges-python
|
public |
SBG API python client bindings
|
2024-10-19 |
|
pyteomics
|
public |
A framework for proteomics data analysis.
|
2024-10-18 |
|
rseqc
|
public |
QC package for RNA-seq data.
|
2024-10-16 |
|
solvebio
|
public |
The SolveBio Python client
|
2024-10-14 |
|
perl-namespace-autoclean
|
public |
Keep imports out of your namespace
|
2024-10-14 |
|
thermorawfileparser
|
public |
Wrapper around the .net (C#) ThermoFisher ThermoRawFileReader library for running on Linux with mono
|
2024-10-14 |
|
openms
|
public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses
|
2024-10-13 |
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rna-seqc
|
public |
Fast, efficient RNA-Seq metrics for quality control and process optimization.
|
2024-10-11 |
|
busco
|
public |
Assessment of assembly completeness using Universal Single Copy Orthologs.
|
2024-10-11 |
|
biobb_common
|
public |
Biobb_common is the base package required to use the biobb packages.
|
2024-10-11 |
|
pyfaidx
|
public |
pyfaidx: efficient pythonic random access to fasta subsequences
|
2024-10-10 |
|
nanosim
|
public |
NanoSim is a fast and scalable read simulator for Nanopore sequencing data.
|
2024-10-10 |
|
picard
|
public |
Java tools for working with NGS data in the BAM format
|
2024-10-10 |
|
kmc
|
public |
Tools for efficient k-mer counting and filtering of reads based on k-mer content.
|
2024-10-09 |
|
delly
|
public |
Structural variant discovery by integrated paired-end and split-read analysis
|
2024-10-09 |
|
pepnovo
|
public |
No Summary
|
2024-10-08 |
|
breseq
|
public |
A computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data.
|
2024-10-07 |
|
pyliftover
|
public |
Pure-python implementation of UCSC ``liftOver`` genome coordinate conversion.
|
2024-10-07 |
|
galaxy_sequence_utils
|
public |
Sequence Utilities from the Galaxy project
|
2024-10-07 |
|
orthofinder
|
public |
Accurate inference of orthogroups, orthologues, gene trees and rooted species tree made easy!
|
2024-10-07 |
|
cutadapt
|
public |
Trim adapters from high-throughput sequencing reads
|
2024-10-07 |
|
mashmap
|
public |
A fast approximate aligner for long DNA sequences.
|
2024-10-04 |
|
lighter
|
public |
Lighter is a kmer-based error correction method for whole genome sequencing data
|
2024-10-03 |
|
pysradb
|
public |
Python package for retrieving metadata and downloading datasets from SRA/ENA/GEO
|
2024-10-03 |
|
perl-convert-binary-c
|
public |
Binary Data Conversion using C Types
|
2024-10-02 |
|
gappa
|
public |
Genesis Applications for Phylogenetic Placement Analysis
|
2024-10-02 |
|
mhcflurry
|
public |
MHC Binding Predictor
|
2024-10-02 |
|
bambamc
|
public |
lightweight C implementation of name collating BAM file input and BAM file output
|
2024-10-02 |
|
python-hivclustering
|
public |
A Python 3 library that makes inferences on HIV-1 transmission networks.
|
2024-10-01 |
|
peptide-shaker
|
public |
Independent platform for interpretation of proteomics identification results.
|
2024-10-01 |
|
searchgui
|
public |
User-friendly graphical tool for using proteomics identification search engines.
|
2024-10-01 |
|
agfusion
|
public |
Python package to annotate and visualize gene fusions.
|
2024-09-30 |
|
genomedata
|
public |
Tools for accessing large amounts of genomic data
|
2024-09-29 |
|
trnascan-se
|
public |
tRNA detection in large-scale genomic sequences
|
2024-09-27 |
|
infernal
|
public |
Infernal is for searching DNA sequence databases for RNA structure and sequence similarities.
|
2024-09-27 |
|
kallisto
|
public |
Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
|
2024-09-25 |
|
planemo
|
public |
Command-line utilities to assist in building tools for the Galaxy project (http://galaxyproject.org/).
|
2024-09-24 |
