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bioconductor-tissueenrich
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public |
Tissue-specific gene enrichment analysis
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2025-03-25 |
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bioconductor-chromvar
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public |
Chromatin Variation Across Regions
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2025-03-25 |
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plek
|
public |
Predictor of long non-coding RNAs and mRNAs based on k-mer scheme.
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2025-03-25 |
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r-pctgcdata
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public |
Provides GC percentage of a 1 kilobase window at a genomic position for different builds of human and mouse genomes.
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2025-03-25 |
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r-nabor
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public |
An R wrapper for 'libnabo', an exact or approximate k nearest neighbour library which is optimised for low dimensional spaces (e.g. 3D)
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2025-03-25 |
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fgmp
|
public |
FGMP: assessing fungal genome completeness and gene content.
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2025-03-25 |
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transit
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public |
TRANSIT
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2025-03-25 |
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ska
|
public |
SKA (Split Kmer Analysis)
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2025-03-25 |
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gneiss
|
public |
Compositional data analysis tools and visualizations
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2025-03-25 |
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batvi
|
public |
Detect viral integrations
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2025-03-25 |
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clust
|
public |
Optimised consensus clustering of multiple heterogeneous datasets.
|
2025-03-25 |
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bioconductor-enrichmentbrowser
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public |
Seamless navigation through combined results of set-based and network-based enrichment analysis
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2025-03-25 |
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das_tool
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public |
Recovery of genomes from metagenomes via a dereplication,
aggregation and scoring strategy.
|
2025-03-25 |
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sompy
|
public |
Numpy based SOM Library.
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2025-03-25 |
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perl-number-range
|
public |
Perl extension defining ranges of numbers and testing if a number is found in the range
|
2025-03-25 |
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vcf-annotator
|
public |
Use the reference GenBank file to add biological annotations to the variant calls in a VCF.
|
2025-03-25 |
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fqzcomp
|
public |
Fqzcomp is a basic fastq compressor, designed primarily for high performance.
|
2025-03-25 |
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megan
|
public |
A tool for studying the taxonomic content of a set of DNA reads
|
2025-03-25 |
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pydemult
|
public |
Streamed and parallel demultiplexing of fastq files in python
|
2025-03-25 |
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r-ggbiplot
|
public |
A biplot based on ggplot2
|
2025-03-25 |
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bioconductor-rnaseqsamplesize
|
public |
RnaSeqSampleSize
|
2025-03-25 |
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bioconductor-rnaseqsamplesizedata
|
public |
RnaSeqSampleSizeData
|
2025-03-25 |
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scanpy-scripts
|
public |
Scripts for using scanpy from the command line
|
2025-03-25 |
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hmftools-cobalt
|
public |
Calculate read-depth counts and GC ratios to use in PURPLE.
|
2025-03-25 |
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r-sequenza
|
public |
Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.
|
2025-03-25 |
|
fred2
|
public |
Python-based framework for computational immunomics.
|
2025-03-25 |
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biobb_model
|
public |
Biobb_model is the Biobb module collection to check and model 3d structures, create mutations or reconstruct missing atoms.
|
2025-03-25 |
|
rnaquast
|
public |
rnaQUAST is a tool for evaluating RNA-Seq assemblies using reference genome and gene database. In addition, rnaQUAST is also capable of estimating gene database coverage by raw reads and de novo quality assessment using third-party software.
|
2025-03-25 |
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bioconductor-targetscan.hs.eg.db
|
public |
TargetScan miRNA target predictions for human assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.
|
2025-03-25 |
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bioconductor-enrichplot
|
public |
Visualization of Functional Enrichment Result
|
2025-03-25 |
|
card_trick
|
public |
Utility package to find gene <-> drug relationships within CARD
|
2025-03-25 |
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r-gpca
|
public |
This package implements guided principal components analysis for the detection of batch effects in high-throughput data.
|
2025-03-25 |
|
fastq-scan
|
public |
FASTQ summary statistics in JSON format
|
2025-03-25 |
|
assembly-scan
|
public |
Assembly summary statistics in JSON format
|
2025-03-25 |
|
r-poppr
|
public |
An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
|
2025-03-25 |
|
any2fasta
|
public |
Convert various sequence formats to FASTA
|
2025-03-25 |
|
evofold2
|
public |
Identifies functional RNA-structure in multiple sequence alignments.
|
2025-03-25 |
|
consan
|
public |
Pairwise RNA structural alignment, both unconstrained and constrained on alignment pins.
|
2025-03-25 |
|
sonicparanoid
|
public |
SonicParanoid: fast, accurate, and comprehensive orthology inference with machine learning and language models
|
2025-03-25 |
|
r-polysat
|
public |
A collection of tools to handle microsatellite data of any ploidy (and samples of mixed ploidy) where allele copy number is not known in partially heterozygous genotypes.
|
2025-03-25 |
|
translate-gard
|
public |
Converts HyPhy 2.3.2 GARD output to JSON
|
2025-03-25 |
|
seer
|
public |
sequence element (kmer) enrichment analysis
|
2025-03-25 |
|
tiptoft
|
public |
Predict plasmids from uncorrected long read data.
|
2025-03-25 |
|
pypairs
|
public |
A python scRNA-Seq classifier
|
2025-03-25 |
|
cgpbigwig
|
public |
BigWig manpulation tools using libBigWig and htslib
|
2025-03-25 |
|
bcalm
|
public |
BCALM 2 is a bioinformatics tool for constructing the compacted de Bruijn graph from sequencing data.
|
2025-03-25 |
|
openslide-python
|
public |
Python interface to OpenSlide
|
2025-03-25 |
|
r-fgwas
|
public |
GWAS tools for longitudinal genetic traits based on fGWAS statistical model.
|
2025-03-25 |
|
fpa
|
public |
Filter Pairwise Alignment filter long read mapping information to save disk space
|
2025-03-25 |
|
prince
|
public |
PRINCE estimates Variable Number Tandem Repeats (VNTR) copy number from raw next generation sequencing (NGS) data.
|
2025-03-25 |
