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pbmm2
|
public |
A minimap2 frontend for PacBio native data formats
|
2024-12-13 |
|
ucsc-ameme
|
public |
find common patterns in DNA
|
2024-12-13 |
|
lightassembler
|
public |
Lightweight assembly algorithm designed to be executed on a desktop machine. It uses a pair of cache oblivious Bloom filters, one holding a uniform sample of g-spaced sequenced k-mers and the other holding k-mers classified as likely correct, using a simple statistical test.
|
2024-12-13 |
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ucsc-chainmergesort
|
public |
Combine sorted files into larger sorted file
|
2024-12-13 |
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admixtools
|
public |
ADMIXTOOLS (Patterson et al. 2012) is a software package that supports formal tests of whether admixture occurred, and makes it possible to infer admixture proportions and dates.
|
2024-12-13 |
|
ucsc-bigbedinfo
|
public |
Show information about a bigBed file.
|
2024-12-13 |
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gocr
|
public |
GOCR is an OCR (Optical Character Recognition) program
|
2024-12-13 |
|
dnp-corrprofile
|
public |
Profile of correlations between the patterns of dinucleotide frequency on forward and reverse strands
|
2024-12-13 |
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squizz
|
public |
Squizz is a sequence/alignment format checker, but it has some conversion capabilities too.
|
2024-12-13 |
|
harvesttools
|
public |
HarvestTools is a part of the Harvest software suite and provides file conversion between Gingr files and various standard text formats
|
2024-12-13 |
|
lz4-bin
|
public |
Extremely Fast Compression Application
|
2024-12-13 |
|
spades
|
public |
SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies.
|
2024-12-13 |
|
spaln
|
public |
Map and align a set of cDNA/EST or protein sequences onto a genome
|
2024-12-13 |
|
macs2
|
public |
Model Based Analysis for ChIP-Seq data
|
2024-12-13 |
|
ucsc-bigbedsummary
|
public |
Extract summary information from a bigBed file.
|
2024-12-13 |
|
ucsc-pslscore
|
public |
calculate web blat score from psl files
|
2024-12-13 |
|
ncbi-ngs-sdk
|
public |
NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing.
|
2024-12-13 |
|
abundancebin
|
public |
No Summary
|
2024-12-13 |
|
xtandem
|
public |
No Summary
|
2024-12-13 |
|
fasta3
|
public |
The FASTA package - protein and DNA sequence similarity searching and alignment programs
|
2024-12-13 |
|
minimap
|
public |
Experimental tool to find approximate mapping positions between long sequences
|
2024-12-13 |
|
libdivsufsort
|
public |
No Summary
|
2024-12-13 |
|
2pg_cartesian
|
public |
2pg cartesian is a framework of optimization algorithms for protein structure prediction.
|
2024-12-13 |
|
perl-data-uuid
|
public |
Globally/Universally Unique Identifiers (GUIDs/UUIDs)
|
2024-12-13 |
|
ucsc-paranodestart
|
public |
version 12.18
|
2024-12-13 |
|
karect
|
public |
Read error correction tool based on multiple alignment.
|
2024-12-13 |
|
allegro
|
public |
A fast linkage and haplotype analysis utility making use of MTBDD to reduce complexity.
|
2024-12-13 |
|
fwdpy11
|
public |
Forward-time population genetic simulation in Python.
|
2024-12-13 |
|
digestiflow-cli
|
public |
Command line client for Digestiflow.
|
2024-12-13 |
|
pgma-simple
|
public |
No Summary
|
2024-12-13 |
|
ucsc-bedweedoverlapping
|
public |
Filter out beds that overlap a 'weed.bed' file.
|
2024-12-13 |
|
meryl
|
public |
No Summary
|
2024-12-13 |
|
ska
|
public |
SKA (Split Kmer Analysis)
|
2024-12-13 |
|
ucsc-dbsnoop
|
public |
Produce an overview of a database.
|
2024-12-13 |
|
fmlrc
|
public |
A long-read error correction tool using the multi-string Burrows Wheeler Transform
|
2024-12-13 |
|
estscan
|
public |
No Summary
|
2024-12-13 |
|
ucsc-linestora
|
public |
generate .ra format from lines with pipe-separated fields
|
2024-12-13 |
|
ucsc-stringify
|
public |
Convert file to C strings.
|
2024-12-13 |
|
vdjer
|
public |
B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data
|
2024-12-13 |
|
perl-socket6
|
public |
IPv6 related part of the C socket.h defines and structure manipulators
|
2024-12-13 |
|
ucsc-bigpsltopsl
|
public |
convert bigPsl file to psl
|
2024-12-13 |
|
w4mclassfilter
|
public |
Filter Workflow4Metabolomics feature list, optionally imputing NA values.
|
2024-12-13 |
|
diamond
|
public |
Accelerated BLAST compatible local sequence aligner
|
2024-12-13 |
|
ucsc-wigcorrelate
|
public |
Produce a table that correlates all pairs of wigs.
|
2024-12-13 |
|
perl-perl-unsafe-signals
|
public |
Allow unsafe handling of signals in selected blocks
|
2024-12-13 |
|
ucsc-hgfindspec
|
public |
Create hgFindSpec table from trackDb.ra files.
|
2024-12-13 |
|
fqtrim
|
public |
fqtrim is a versatile stand-alone utility that can be used to trim adapters, poly-A tails, terminal unknown bases (Ns) and low quality 3' regions in reads from high-throughput next-generation sequencing machines.
|
2024-12-13 |
|
ucsc-ratolines
|
public |
Output .ra file stanzas as single lines, with pipe-separated fields.
|
2024-12-13 |
|
fasta_ushuffle
|
public |
a wrapper for uShuffle
|
2024-12-13 |
|
art
|
public |
No Summary
|
2024-12-13 |
