| Package Name | Access | Summary | Updated |
|---|---|---|---|
| ucsc-bedtobigbed | public | Convert bed file to bigBed. (BigBed version: 4) | 2025-06-19 |
| perl-json-create | public | fast, minimal, UTF-8-only serialization of data to JSON | 2025-06-19 |
| bioblend | public | A Python library for interacting with the Galaxy API. | 2025-06-18 |
| sra-tools | public | The SRA Toolkit and SDK from NCBI. | 2025-06-18 |
| perl-xml-libxml | public | Interface to Gnome libxml2 xml parsing and DOM library | 2025-06-18 |
| poppunk | public | PopPUNK (POPulation Partitioning Using Nucleotide Kmers) | 2025-06-18 |
| perl-module-list | public | Module `directory' listing. | 2025-06-18 |
| perl-data-munge | public | Various utility functions. | 2025-06-18 |
| daisysuite | public | DaisySuite - mapping-based pipeline for horizontal gene transfer (HGT) detection using sequencing data | 2025-06-18 |
| perl-want | public | No Summary | 2025-06-18 |
| ema | public | Fast & accurate alignment of barcoded short-reads | 2025-06-18 |
| sak | public | This tool allows one to cut sequences and parts of sequences out of sequence files. | 2025-06-18 |
| perl-ipc-cmd | public | A cross platform way of running (interactive) commandline programs. | 2025-06-18 |
| damasker | public | DAMASKER: Module to determine where repeats are and make soft-masks of said | 2025-06-18 |
| fastp | public | A ultra-fast FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...). | 2025-06-18 |
| faqcs | public | Quality Control of Next Generation Sequencing Data. | 2025-06-17 |
| trf | public | Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. | 2025-06-17 |
| mappy | public | Minimap2 Python binding | 2025-06-16 |
| rcorrector | public | Rcorrector (RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data. Rcorrector can also be applied to other type of sequencing data where the read coverage is non-uniform, such as single-cell sequencing. | 2025-06-15 |
| minimap2 | public | A versatile pairwise aligner for genomic and spliced nucleotide sequences. | 2025-06-15 |
| bcftools | public | BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations. | 2025-06-15 |
| asciigenome | public | Command-line genome browser running from terminal window and solely based on ASCII characters | 2025-06-15 |
| perl-indirect | public | Lexically warn about using the indirect method call syntax. | 2025-06-13 |
| perl-http-message | public | HTTP style message (base class). | 2025-06-13 |
| perl-graphviz | public | Interface to AT&T's GraphViz. Deprecated. See GraphViz2. | 2025-06-13 |
