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perl-file-sharedir-install
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public |
Install shared files.
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2025-06-13 |
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perl-namespace-autoclean
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public |
Keep imports out of your namespace
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2025-06-12 |
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perl-archive-tar
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public |
Manipulates TAR archives.
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2025-06-12 |
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r-ic10
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public |
Implementation of the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group.
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2025-06-12 |
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perl-bio-automatedannotation
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public |
Automated annotation of assemblies.
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2025-06-12 |
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perl-gdgraph
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public |
Produces charts with GD.
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2025-06-12 |
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perl-extutils-manifest
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public |
Utilities to write and check a MANIFEST file.
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2025-06-12 |
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perl-moosex-app
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public |
Write user-friendly command line apps with even less suffering
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2025-06-11 |
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perl-http-cookies
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public |
HTTP cookie jars.
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2025-06-11 |
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perl-html-tagset
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public |
Data tables useful in parsing HTML.
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2025-06-11 |
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perl-mime-tools
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public |
Tools to manipulate MIME messages.
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2025-06-11 |
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r-htssip
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public |
Functions for analyzing high throughput sequencing stable isotope probing (HTS-SIP) data. Analyses include high resolution stable isotope probing (HR-SIP), multi-window high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope probing (q-SIP).
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2025-06-11 |
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taxtastic
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public |
Tools for taxonomic naming and annotation
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2025-06-11 |
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tagger
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public |
tagger allows you to tag a corpus of documents with search terms that you provide. It is often used to find mentions of proteins, species, diseases, tissues, chemicals and drugs, GO terms, and so forth, in articles in the Medline corpus.
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2025-06-10 |
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mapsplice
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public |
MapSplice is a software for mapping RNA-seq data to reference genome for splice junction discovery that depends only on reference genome, and not on any further annotations.
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2025-06-10 |
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r-cimpl
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public |
No Summary
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2025-06-10 |
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mykrobe
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public |
Antibiotic resistance prediction in minutes
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2025-06-10 |
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whatshap
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public |
Phase genomic variants using DNA sequencing reads (haplotype assembly).
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2025-06-09 |
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somaticseq
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public |
An ensemble approach to accurately detect somatic mutations.
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2025-06-09 |
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mothur
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public |
This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
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2025-06-06 |
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bcalm
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public |
BCALM 2 is a bioinformatics tool for constructing the compacted de Bruijn graph from sequencing data.
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2025-06-06 |
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bcftools-gtc2vcf-plugin
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public |
Tools to convert Illumina and Affymetrix array intensity data files into VCF files.
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2025-06-06 |
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perl-file-find-rule
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public |
Alternative interface to File::Find.
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2025-06-05 |
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pasta
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public |
An implementation of the PASTA (Practical Alignment using Sate and TrAnsitivity) algorithm.
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2025-06-05 |
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bowtie2
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public |
A fast and sensitive gapped read aligner.
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2025-06-03 |
