| Package Name | Access | Summary | Updated |
|---|---|---|---|
| ucsc-bigwigtowig | public | Convert bigWig to wig. This will keep more of the same structure of the original wig than bigWigToBedGraph does, but still will break up large stepped sections into smaller ones. | 2025-06-25 |
| crossmap | public | CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies. | 2025-06-25 |
| dendropy | public | A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. | 2025-06-25 |
| ucsc-fasplit | public | Split an fa file into several files. | 2025-06-25 |
| ucsc-fasomerecords | public | Extract multiple fa records. | 2025-06-25 |
| ucsc-bigwigsummary | public | Extract summary information from a bigWig file. | 2025-06-25 |
| kneaddata | public | KneadData is a tool designed to perform quality control on metagenomic sequencing data. | 2025-06-25 |
| ucsc-fasize | public | Print total base count in fa files. | 2025-06-24 |
| remurna | public | No Summary | 2025-06-24 |
| dialign2 | public | DIALIGN multiple sequence alignment using various sources of external information | 2025-06-24 |
| rfmix | public | RFMix implements a fast discriminative approach to modeling ancestry along an admixed chromosome given observed haplotype sequences of known or inferred ancestry. | 2025-06-24 |
| perl-io-prompt | public | No Summary | 2025-06-23 |
| ucsc-gtftogenepred | public | Convert a GTF file to a genePred. | 2025-06-23 |
| ucsc-genepredtobed | public | Convert from genePred to bed format. Does not yet handle genePredExt. | 2025-06-22 |
| ucsc-pslcdnafilter | public | Filter cDNA alignments in psl format. Filtering criteria are comparative, selecting near best in genome alignments for each given cDNA and non-comparative, based only on the quality of an individual alignment. | 2025-06-22 |
| ucsc-blat | public | Standalone BLAT v. 39x1 fast sequence search command line tool. | 2025-06-22 |
| ucsc-bedtogenepred | public | Convert bed format files to genePred format. | 2025-06-22 |
| ucsc-liftover | public | Move annotations from one assembly to another. | 2025-06-22 |
| ucsc-stringify | public | Convert file to C strings. | 2025-06-21 |
| ucsc-wigtobigwig | public | Convert ascii format wig file (in fixedStep, variableStep). | 2025-06-21 |
| ucsc-bedgraphtobigwig | public | Convert a bedGraph file to bigWig format. | 2025-06-21 |
| bioconductor-geometadb | public | A compilation of metadata from NCBI GEO | 2025-06-21 |
| biobb_model | public | Biobb_model is the Biobb module collection to check and model 3d structures, create mutations or reconstruct missing atoms. | 2025-06-20 |
| demuxlet | public | Genetic multiplexing of barcoded single cell RNA-seq | 2025-06-19 |
| ucsc-twobitinfo | public | Get information about sequences in a .2bit file. | 2025-06-19 |
