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pasta
|
public |
An implementation of the PASTA (Practical Alignment using Sate and TrAnsitivity) algorithm.
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2025-06-05 |
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bowtie2
|
public |
A fast and sensitive gapped read aligner.
|
2025-06-03 |
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iced
|
public |
The python module iced implements the ICE normalization of hic data.
|
2025-06-03 |
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transit
|
public |
TRANSIT
|
2025-06-02 |
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freebayes
|
public |
Bayesian haplotype-based polymorphism discovery and genotyping.
|
2025-06-02 |
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bioconductor-dirichletmultinomial
|
public |
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
|
2025-06-02 |
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gseapy
|
public |
Gene Set Enrichment Analysis in Python.
|
2025-06-02 |
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bioconductor-decipher
|
public |
Tools for curating, analyzing, and manipulating biological sequences
|
2025-05-29 |
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rsem
|
public |
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data.
|
2025-05-29 |
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evidencemodeler
|
public |
Evidence Modeler combines ab intio gene predictions, protein alignments, and transcript alignments into weighted consensus gene structures
|
2025-05-29 |
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beagle-lib
|
public |
general purpose library for evaluating the likelihood of sequence evolution on trees
|
2025-05-29 |
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rtg-tools
|
public |
RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation.
|
2025-05-29 |
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entrez-direct
|
public |
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.
|
2025-05-28 |
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sonicparanoid
|
public |
SonicParanoid: fast, accurate, and comprehensive orthology inference with machine learning and language models
|
2025-05-28 |
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mcl
|
public |
MCL - a cluster algorithm for graphs
|
2025-05-28 |
|
r-sleuth
|
public |
Tools for investigating RNA-Seq.
|
2025-05-28 |
|
igv
|
public |
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics
data and annotations.
|
2025-05-28 |
|
metabat2
|
public |
Metagenome binning.
|
2025-05-28 |
|
arvados-python-client
|
public |
Python API for Arvados
|
2025-05-28 |
|
cutadapt
|
public |
Trim adapters from high-throughput sequencing reads
|
2025-05-28 |
|
salmon
|
public |
Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
|
2025-05-28 |
|
smallgenomeutilities
|
public |
A collection of scripts that are useful for dealing with viral RNA NGS data.
|
2025-05-28 |
|
kat
|
public |
KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts
|
2025-05-27 |
|
spaln
|
public |
Map and align a set of cDNA/EST or protein sequences onto a genome.
|
2025-05-27 |
|
deepvariant
|
public |
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
|
2025-05-24 |
