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bioconductor-edger
|
public |
Empirical Analysis of Digital Gene Expression Data in R
|
2025-02-06 |
|
bioconductor-impute
|
public |
impute: Imputation for microarray data
|
2025-02-06 |
|
perl-template-toolkit
|
public |
Comprehensive template processing system.
|
2025-02-06 |
|
truvari
|
public |
Structural variant comparison tool for VCFs
|
2025-02-05 |
|
pysam
|
public |
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
|
2025-02-05 |
|
perl-params-validate
|
public |
Validate method/function parameters
|
2025-02-05 |
|
perl-file-copy-link
|
public |
Perl extension for replacing a link by a copy of the linked file.
|
2025-02-05 |
|
clustalw
|
public |
No Summary
|
2025-02-05 |
|
perl-cgi
|
public |
A generic file fetching mechanism.
|
2025-02-05 |
|
perl-data-uuid
|
public |
Globally/Universally Unique Identifiers (GUIDs/UUIDs).
|
2025-02-05 |
|
perl-datetime
|
public |
A date and time object for Perl.
|
2025-02-05 |
|
dialign-tx
|
public |
DIALIGN-TX is a greedy and progressive approaches for segment-based multiple sequence alignment
|
2025-02-05 |
|
bioconductor-biocparallel
|
public |
Bioconductor facilities for parallel evaluation
|
2025-02-05 |
|
bioconductor-pcamethods
|
public |
A collection of PCA methods
|
2025-02-05 |
|
bioconductor-limma
|
public |
Linear Models for Microarray and Omics Data
|
2025-02-05 |
|
gseapy
|
public |
Gene Set Enrichment Analysis in Python
|
2025-02-05 |
|
manta
|
public |
Structural variant and indel caller for mapped sequencing data
|
2025-02-04 |
|
mash
|
public |
Fast sequence distance estimator that uses MinHash
|
2025-02-04 |
|
mummer4
|
public |
MUMmer is a system for rapidly aligning entire genomes.
|
2025-02-04 |
|
fastx_toolkit
|
public |
No Summary
|
2025-02-04 |
|
twopaco
|
public |
A fast constructor of the compressed de Bruijn graph from many genomes.
|
2025-02-03 |
|
perl-gd
|
public |
Perl interface to the gd2 graphics library
|
2025-02-03 |
|
perl-gdtextutil
|
public |
Text utilities for use with GD
|
2025-02-03 |
|
perl-perl-version
|
public |
Parse and manipulate Perl version strings
|
2025-02-03 |
|
nanoplot
|
public |
Plotting suite for long read sequencing data and alignments
|
2025-02-02 |
|
msstitch
|
public |
MS proteomics post processing utilities.
|
2025-02-02 |
|
pymzml
|
public |
High-throughput mzML parsing.
|
2025-01-31 |
|
krakenuniq
|
public |
Metagenomics classifier with unique k-mer counting for more specific results
|
2025-01-31 |
|
sequencetools
|
public |
A tool (pileupCaller) for processing ancient DNA sequencing data
|
2025-01-30 |
|
perl-libwww-perl
|
public |
The World-Wide Web library for Perl.
|
2025-01-29 |
|
perl-lwp-simple
|
public |
simple procedural interface to LWP
|
2025-01-29 |
|
bioconda-utils
|
public |
Utilities for building and managing bioconda recipes.
|
2025-01-29 |
|
maxbin2
|
public |
MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm.
|
2025-01-29 |
|
flashlfq
|
public |
Ultrafast label-free quantification algorithm for mass-spectrometry proteomics.
|
2025-01-29 |
|
perl-html-parser
|
public |
HTML parser class
|
2025-01-29 |
|
bioconductor-biocgenerics
|
public |
S4 generic functions used in Bioconductor
|
2025-01-29 |
|
bioconductor-copynumber
|
public |
Segmentation of single- and multi-track copy number data by penalized least squares regression.
|
2025-01-29 |
|
bioconductor-genomeinfodb
|
public |
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
|
2025-01-29 |
|
bioconductor-iranges
|
public |
Foundation of integer range manipulation in Bioconductor
|
2025-01-29 |
|
bioconductor-xvector
|
public |
Foundation of external vector representation and manipulation in Bioconductor
|
2025-01-29 |
|
bioconductor-s4vectors
|
public |
Foundation of vector-like and list-like containers in Bioconductor
|
2025-01-29 |
|
bioconductor-zlibbioc
|
public |
An R packaged zlib-1.2.5
|
2025-01-29 |
|
pairix
|
public |
2D indexing on bgzipped text files of paired genomic coordinates
|
2025-01-28 |
|
egglib
|
public |
Evolutionary Genetics and Genomics Library. EggLib is a C++/Python library and program package for evolutionary genetics and genomics. Main features are sequence data management, sequence polymorphism analysis, and coalescent simulations. EggLib is a flexible Python module with a performant underlying C++ library and allows fast and intuitive development of Python programs and scripts.
|
2025-01-28 |
|
picrust2
|
public |
PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States
|
2025-01-28 |
|
pybigwig
|
public |
A python extension written in C for quick access to bigWig files.
|
2025-01-28 |
|
eggnog-mapper
|
public |
Fast genome-wide functional annotation through orthology assignment.
|
2025-01-28 |
|
nf-core
|
public |
Python package with helper tools for the nf-core community.
|
2025-01-27 |
|
ngs-bits
|
public |
Short-read sequencing tools
|
2025-01-27 |
|
poppunk
|
public |
PopPUNK (POPulation Partitioning Using Nucleotide Kmers)
|
2025-01-27 |
