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xsd
|
public |
No Summary
|
2025-03-13 |
|
r-ggbiplot
|
public |
A biplot based on ggplot2
|
2025-03-13 |
|
python-edlib
|
public |
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
|
2025-03-13 |
|
r-lncpipereporter
|
public |
Automatically Aggregating and Summarizing lncRNA Analysis Results for Interactive Report
|
2025-03-13 |
|
miranda
|
public |
An algorithm for finding genomic targets for microRNAs
|
2025-03-12 |
|
plek
|
public |
Predictor of long non-coding RNAs and mRNAs based on k-mer scheme.
|
2025-03-12 |
|
seqkit
|
public |
a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
|
2025-03-12 |
|
taxonkit
|
public |
A Cross-platform and Efficient NCBI Taxonomy Toolkit
|
2025-03-12 |
|
perl-list-moreutils-xs
|
public |
Provide the stuff missing in List::Util in XS
|
2025-03-12 |
|
sniffles
|
public |
Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore).
|
2025-03-12 |
|
eggnog-mapper
|
public |
Fast genome-wide functional annotation through orthology assignment.
|
2025-03-11 |
|
wgsim
|
public |
No Summary
|
2025-03-11 |
|
segemehl
|
public |
Short read mapping with gaps
|
2025-03-11 |
|
pear
|
public |
paired-end read merger
|
2025-03-11 |
|
pysamstats
|
public |
A Python utility for calculating statistics against genome position based on sequence alignments from a SAM, BAM or CRAM file.
|
2025-03-11 |
|
meme
|
public |
Motif-based sequence analysis tools.
|
2025-03-11 |
|
smallgenomeutilities
|
public |
A collection of scripts that are useful for dealing with viral RNA NGS data.
|
2025-03-10 |
|
presto
|
public |
A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
|
2025-03-10 |
|
dxpy
|
public |
DNAnexus Platform API bindings for Python
|
2025-03-10 |
|
perl-cgi
|
public |
A generic file fetching mechanism.
|
2025-03-10 |
|
gmap
|
public |
Genomic mapping and alignment program for mRNA and EST sequences.
|
2025-03-07 |
|
taxtastic
|
public |
Tools for taxonomic naming and annotation
|
2025-03-07 |
|
busco
|
public |
Assessment of assembly completeness using Universal Single Copy Orthologs.
|
2025-03-07 |
|
bioblend
|
public |
A Python library for interacting with the Galaxy API.
|
2025-03-07 |
|
bioconductor-dada2
|
public |
Accurate, high-resolution sample inference from amplicon sequencing data
|
2025-03-07 |
|
gmap-fusion
|
public |
GMAP-fusion is a utility for identifying candidate fusion transcripts based on transcript sequences reconstructed via RNA-Seq de novo transcriptome assembly.
|
2025-03-06 |
|
transdecoder
|
public |
TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.
|
2025-03-06 |
|
fusion-filter
|
public |
FusionFilter provides a common fusion-finding, filtering, and annotation framework for the Trinity Cancer Transcriptome Analysis Toolkit (CTAT).
|
2025-03-06 |
|
fusion-inspector
|
public |
FusionInspector is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). FusionInspector assists in fusion transcript discovery by performing a supervised analysis of fusion predictions, attempting to recover and re-score evidence for such predictions. - https://github.com/FusionInspector/FusionInspector/wiki
|
2025-03-06 |
|
bam-readcount
|
public |
bam-readcount generates metrics at single nucleotide positions.
|
2025-03-05 |
|
nextflow
|
public |
A DSL for data-driven computational pipelines http://nextflow.io
|
2025-03-04 |
|
picrust2
|
public |
PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States
|
2025-03-04 |
|
pfam_scan
|
public |
pfam_scan.pl is a Perl script calling HMMER v3 to search a FASTA file against a library of Pfam HMMs.
|
2025-03-04 |
|
frogs
|
public |
FROGS is a workflow designed to metabarcoding sequence analysis
|
2025-03-04 |
|
planemo
|
public |
Command-line utilities to assist in building tools for the Galaxy project (http://galaxyproject.org/).
|
2025-03-03 |
|
perl-math-bigint
|
public |
Arbitrary size floating point math package
|
2025-03-03 |
|
perl-graph
|
public |
a Perl extension for keeping data partially sorted
|
2025-03-02 |
|
gseapy
|
public |
Gene Set Enrichment Analysis in Python.
|
2025-03-01 |
|
igv
|
public |
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics
data and annotations.
|
2025-02-28 |
|
colorbrewer
|
public |
An easy way to get access to ColorBrewer schemes from within a Python program.
|
2025-02-27 |
|
vsearch
|
public |
A versatile open source tool for metagenomics (USEARCH alternative)
|
2025-02-27 |
|
bracken
|
public |
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
|
2025-02-26 |
|
pbmm2
|
public |
A minimap2 frontend for PacBio native data formats
|
2025-02-26 |
|
sambamba
|
public |
Tools for working with SAM/BAM data
|
2025-02-26 |
|
pbsv
|
public |
pbsv - PacBio structural variant (SV) calling and analysis tools
|
2025-02-26 |
|
lima
|
public |
lima - The PacBio Barcode Demultiplexer
|
2025-02-26 |
|
megan
|
public |
A tool for studying the taxonomic content of a set of DNA reads
|
2025-02-26 |
|
oases
|
public |
No Summary
|
2025-02-26 |
|
kma
|
public |
KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend.
|
2025-02-26 |
|
ivar
|
public |
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
|
2025-02-26 |
