bioconda / packages / bioconductor-dada2 1.10.0

The dada2 package infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and species-level assignment to 16S rRNA gene fragments by exact matching.

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.10.0
  • osx-64  v1.10.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-dada2
conda install -c bioconda/label/gcc7 bioconductor-dada2
conda install -c bioconda/label/cf201901 bioconductor-dada2

Description

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