| Package Name | Access | Summary | Updated |
|---|---|---|---|
| stereogene | public | StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data | 2025-08-01 |
| ngseqbasic | public | Basic ChIP/DNaseI/ATAC analysis - from FASTQ to visualisation of tracks, in one command. | 2025-08-01 |
| libsequence | public | A C++ class library for evolutionary genetics. | 2025-08-01 |
| changeo | public | A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data. | 2025-07-31 |
| ntcard | public | Estimating k-mer coverage histogram of genomics data | 2025-07-31 |
| ghostz | public | GHOSTZ is a highly efficient remote homologue detection tool | 2025-07-31 |
| soapdenovo-trans | public | No Summary | 2025-07-31 |
| muscle | public | Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences | 2025-07-31 |
| bx-python | public | Tools for manipulating biological data, particularly multiple sequence alignments. | 2025-07-31 |
| racon | public | Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. | 2025-07-30 |
| delly | public | Structural variant discovery by integrated paired-end and split-read analysis. | 2025-07-30 |
| ska | public | SKA (Split Kmer Analysis) | 2025-07-30 |
| flashlfq | public | Ultrafast label-free quantification algorithm for mass-spectrometry proteomics. | 2025-07-29 |
| rdock | public | No Summary | 2025-07-29 |
| nanoblaster | public | Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences | 2025-07-28 |
| sequana | public | A set of standalone application and snakemake pipelines dedicated to NGS (new generation sequencing) analysis. | 2025-07-28 |
| diamond | public | Accelerated BLAST compatible local sequence aligner. | 2025-07-28 |
| hmftools-cobalt | public | Calculate read-depth counts and GC ratios to use in PURPLE. | 2025-07-28 |
| readfq | public | A high-speed tool to calculate reads number and total base count in FASTQ file, forked from Li Heng's original version | 2025-07-28 |
| kmergenie | public | KmerGenie estimates the best k-mer length for genome de novo assembly | 2025-07-28 |
| maker | public | MAKER is a portable and easily configurable genome annotation pipeline. | 2025-07-28 |
| graphaligner | public | Sequence to graph aligner for long reads | 2025-07-27 |
| plass | public | Plass (Protein-Level ASSembler) and PenguiN (Protein-guided Nucleotide assembler) are methods to assemble short read sequencing data on a protein level to proteins or DNA contigs | 2025-07-27 |
| mmseqs2 | public | MMseqs2: ultra fast and sensitive sequence search and clustering suite | 2025-07-27 |
| perl-dbd-sqlite | public | Self Contained RDBMS in a DBI Driver | 2025-07-24 |
