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bioconductor-beclear
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public |
Correction of batch effects in DNA methylation data
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2024-12-17 |
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bioconductor-stemhypoxia
|
public |
Differentiation of Human Embryonic Stem Cells under Hypoxia gene expression dataset by Prado-Lopez et al. (2010)
|
2024-12-17 |
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bbmap
|
public |
BBMap is a short read aligner, as well as various other bioinformatic tools.
|
2024-12-17 |
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bioconductor-cnanorm
|
public |
A normalization method for Copy Number Aberration in cancer samples
|
2024-12-17 |
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bioconductor-arrmdata
|
public |
Example dataset for normalization of Illumina 450k Methylation data
|
2024-12-17 |
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r-stitch
|
public |
STITCH - Sequencing To Imputation Through Constructing Haplotypes.
|
2024-12-17 |
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bioconductor-biobase
|
public |
Biobase: Base functions for Bioconductor
|
2024-12-17 |
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bioconductor-lungcanceracvssccgeo
|
public |
A lung cancer dataset that can be used with maPredictDSC package for developing outcome prediction models from Affymetrix CEL files.
|
2024-12-17 |
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bedops
|
public |
High-performance genomic feature operations.
|
2024-12-17 |
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bioconductor-drugvsdiseasedata
|
public |
Drug versus Disease Data
|
2024-12-17 |
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bioconductor-ebimage
|
public |
Image processing and analysis toolbox for R
|
2024-12-17 |
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bioconductor-fis
|
public |
Human Functional Interactions (FIs) for splineTimeR package
|
2024-12-17 |
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bioconductor-bufferedmatrixmethods
|
public |
Microarray Data related methods that utlize BufferedMatrix objects
|
2024-12-17 |
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staramr
|
public |
Scan genome contigs against the ResFinder and PointFinder databases
|
2024-12-17 |
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sniffles
|
public |
Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore).
|
2024-12-17 |
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bioconductor-bader
|
public |
Bayesian Analysis of Differential Expression in RNA Sequencing Data
|
2024-12-17 |
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bioconductor-aseb
|
public |
Predict Acetylated Lysine Sites
|
2024-12-17 |
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bioconductor-hibag
|
public |
HLA Genotype Imputation with Attribute Bagging
|
2024-12-17 |
|
bioconductor-chopsticks
|
public |
The 'snp.matrix' and 'X.snp.matrix' Classes
|
2024-12-17 |
|
bioconductor-dnabarcodes
|
public |
A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments
|
2024-12-16 |
|
bioconductor-bufferedmatrix
|
public |
A matrix data storage object held in temporary files
|
2024-12-16 |
|
bioconductor-viper
|
public |
Virtual Inference of Protein-activity by Enriched Regulon analysis
|
2024-12-16 |
|
bioconductor-spem
|
public |
S-system parameter estimation method
|
2024-12-16 |
|
bioconductor-affycomp
|
public |
Graphics Toolbox for Assessment of Affymetrix Expression Measures
|
2024-12-16 |
|
bioconductor-cghbase
|
public |
CGHbase: Base functions and classes for arrayCGH data analysis.
|
2024-12-16 |
|
bioconductor-convert
|
public |
Convert Microarray Data Objects
|
2024-12-16 |
|
ivar
|
public |
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
|
2024-12-16 |
|
bioconductor-plgem
|
public |
Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)
|
2024-12-16 |
|
bioconductor-annotationtools
|
public |
Annotate microarrays and perform cross-species gene expression analyses using flat file databases
|
2024-12-16 |
|
perl-moosex-role-withoverloading
|
public |
(DEPRECATED) Roles which support overloading
|
2024-12-16 |
|
bioconductor-randpack
|
public |
Randomization routines for Clinical Trials
|
2024-12-16 |
|
perl-statistics-r
|
public |
No Summary
|
2024-12-16 |
|
bioconductor-gsealm
|
public |
Linear Model Toolset for Gene Set Enrichment Analysis
|
2024-12-16 |
|
perl-cgi
|
public |
A generic file fetching mechanism
|
2024-12-16 |
|
bioconductor-massir
|
public |
massiR: MicroArray Sample Sex Identifier
|
2024-12-16 |
|
bioconductor-spktools
|
public |
Methods for Spike-in Arrays
|
2024-12-16 |
|
bioconductor-methped
|
public |
A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes
|
2024-12-16 |
|
bioconductor-noiseq
|
public |
Exploratory analysis and differential expression for RNA-seq data
|
2024-12-16 |
|
bioconductor-michip
|
public |
MiChip Parsing and Summarizing Functions
|
2024-12-16 |
|
bioconductor-masigpro
|
public |
Significant Gene Expression Profile Differences in Time Course Gene Expression Data
|
2024-12-16 |
|
bioconductor-qusage
|
public |
qusage: Quantitative Set Analysis for Gene Expression
|
2024-12-16 |
|
bioconductor-acme
|
public |
Algorithms for Calculating Microarray Enrichment (ACME)
|
2024-12-16 |
|
bioconductor-dyebias
|
public |
The GASSCO method for correcting for slide-dependent gene-specific dye bias
|
2024-12-16 |
|
sequencetools
|
public |
Tools for population genetics on sequencing data
|
2024-12-16 |
|
bioconductor-cma
|
public |
Synthesis of microarray-based classification
|
2024-12-16 |
|
bioconductor-readqpcr
|
public |
Read qPCR data
|
2024-12-16 |
|
bioconductor-help
|
public |
Tools for HELP data analysis
|
2024-12-16 |
|
nextflow
|
public |
A DSL for data-driven computational pipelines http://nextflow.io
|
2024-12-16 |
|
bioconductor-clusterstab
|
public |
Compute cluster stability scores for microarray data
|
2024-12-16 |
|
perl-sanger-cgp-vcf
|
public |
a set of common perl utilities for generating consistent Vcf headers
|
2024-12-16 |
