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bioconductor-frmatools
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public |
Frozen RMA Tools
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2024-12-19 |
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bioconductor-eximir
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public |
R functions for the normalization of Exiqon miRNA array data
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2024-12-19 |
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bioconductor-hapfabia
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public |
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data
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2024-12-19 |
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abyss
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public |
Assembly By Short Sequences - a de novo, parallel, paired-end short read sequence assembler.
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2024-12-19 |
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bioconductor-rtopper
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public |
This package is designed to perform Gene Set Analysis across multiple genomic platforms
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2024-12-19 |
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bioconductor-hyperdraw
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public |
Visualizing Hypergaphs
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2024-12-19 |
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atropos
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public |
trim adapters from high-throughput sequencing reads
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2024-12-19 |
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bioconductor-makecdfenv
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public |
CDF Environment Maker
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2024-12-19 |
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bioconductor-panp
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public |
Presence-Absence Calls from Negative Strand Matching Probesets
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2024-12-19 |
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bioconductor-cardinal
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public |
A mass spectrometry imaging toolbox for statistical analysis
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2024-12-19 |
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bioconductor-cghregions
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public |
Dimension Reduction for Array CGH Data with Minimal Information Loss.
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2024-12-19 |
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r-hemdag
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public |
a collection of Hierarchical Ensemble Methods (HEMs) for Directed Acyclic Graphs (DAGs).
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2024-12-19 |
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bioconductor-cormotif
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public |
Correlation Motif Fit
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2024-12-19 |
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bioconductor-affydata
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public |
Affymetrix Data for Demonstration Purpose
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2024-12-19 |
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r-mutoss
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public |
Designed to ease the application and comparison of multiple hypothesis testing procedures for FWER, gFWER, FDR and FDX. Methods are standardized and usable by the accompanying 'mutossGUI'.
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2024-12-19 |
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bioconductor-rain
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public |
Rhythmicity Analysis Incorporating Non-parametric Methods
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2024-12-19 |
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bioconductor-paircompviz
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public |
Multiple comparison test visualization
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2024-12-19 |
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whatshap
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public |
phase genomic variants using DNA sequencing reads (haplotype assembly)
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2024-12-19 |
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python-bioext
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public |
A few handy bioinformatics tools not already in BioPython
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2024-12-19 |
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bioconductor-biocviews
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public |
Categorized views of R package repositories
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2024-12-19 |
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bioconductor-stategra
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public |
Classes and methods for multi-omics data integration
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2024-12-19 |
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bioconductor-cghcall
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public |
Calling aberrations for array CGH tumor profiles.
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2024-12-19 |
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bioconductor-flowclean
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public |
flowClean
|
2024-12-18 |
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bioconductor-mspurity
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public |
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
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2024-12-18 |
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bioconductor-simat
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public |
GC-SIM-MS data processing and alaysis tool
|
2024-12-18 |
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bioconductor-consensusclusterplus
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public |
ConsensusClusterPlus
|
2024-12-18 |
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disco
|
public |
Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler
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2024-12-18 |
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bioconductor-vsn
|
public |
Variance stabilization and calibration for microarray data
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2024-12-18 |
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bioconductor-flowbeads
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public |
flowBeads: Analysis of flow bead data
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2024-12-18 |
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r-tidygenomics
|
public |
Handle genomic data within data frames just as you would with 'GRanges'. This packages provides method to deal with genomic intervals the "tidy-way" which makes it simpler to integrate in the the general data munging process. The API is inspired by the popular 'bedtools' and the genome_join() method from the 'fuzzyjoin' package.
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2024-12-18 |
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bioconductor-dirichletmultinomial
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public |
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
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2024-12-18 |
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bioconductor-metaseq
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public |
Meta-analysis of RNA-Seq count data in multiple studies
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2024-12-18 |
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bioconductor-turbonorm
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public |
A fast scatterplot smoother suitable for microarray normalization
|
2024-12-18 |
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bioconductor-ruvnormalize
|
public |
RUV for normalization of expression array data
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2024-12-18 |
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bioconductor-complexheatmap
|
public |
Make Complex Heatmaps
|
2024-12-18 |
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bioconductor-derfinderhelper
|
public |
derfinder helper package
|
2024-12-18 |
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r-perfmeas
|
public |
Package that implements different performance measures for classification and ranking tasks. AUC, precision at a given recall, F-score for single and multiple classes are available.
|
2024-12-18 |
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bioconductor-nucleosim
|
public |
Generate synthetic nucleosome maps
|
2024-12-18 |
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prophyle
|
public |
ProPhyle is an accurate, resource-frugal and deterministic phylogeny-based metagenomic classifier.
|
2024-12-18 |
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bioconductor-scde
|
public |
Single Cell Differential Expression
|
2024-12-18 |
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r-aroma.affymetrix
|
public |
A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system. The only parameter that limits the number of chips that can be processed is the amount of available disk space. The Aroma Framework has successfully been used in studies to process tens of thousands of arrays. This package has actively been used since 2006.
|
2024-12-18 |
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bioconductor-genetclassifier
|
public |
Classify diseases and build associated gene networks using gene expression profiles
|
2024-12-18 |
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bioconductor-orderedlist
|
public |
Similarities of Ordered Gene Lists
|
2024-12-18 |
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bioconductor-genomeinfodb
|
public |
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
|
2024-12-18 |
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bioconductor-pvac
|
public |
PCA-based gene filtering for Affymetrix arrays
|
2024-12-18 |
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pb-falcon
|
public |
FALCON/Unzip tool-suite (originally by Jason Chin)
|
2024-12-18 |
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bioconductor-siggenes
|
public |
Multiple Testing using SAM and Efron's Empirical Bayes Approaches
|
2024-12-18 |
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bioconductor-qpcrnorm
|
public |
Data-driven normalization strategies for high-throughput qPCR data.
|
2024-12-18 |
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bioconductor-kegggraph
|
public |
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
|
2024-12-18 |
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bioconductor-geosubmission
|
public |
Prepares microarray data for submission to GEO
|
2024-12-18 |
