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bioconda / packages / bioconductor-nucleosim 1.30.0

Generate synthetic nucleosome maps

Installers

Info: This package contains files in non-standard labels.
  • linux-64 v1.8.0
  • osx-64 v1.8.0
  • noarch v1.30.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-nucleosim
conda install bioconda/label/cf201901::bioconductor-nucleosim
conda install bioconda/label/gcc7::bioconductor-nucleosim

Description

This package can generate a synthetic map with reads covering the nucleosome regions as well as a synthetic map with forward and reverse reads emulating next-generation sequencing. The synthetic hybridization data of “Tiling Arrays” can also be generated. The user has choice between three different distributions for the read positioning: Normal, Student and Uniform. In addition, a visualization tool is provided to explore the synthetic nucleosome maps.


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