|
dxpy
|
public |
DNAnexus Platform API bindings for Python
|
2024-11-08 |
|
fastp
|
public |
A ultra-fast FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...)
|
2024-11-08 |
|
bioblend
|
public |
A Python library for interacting with the Galaxy API.
|
2024-11-07 |
|
poppunk
|
public |
PopPUNK (POPulation Partitioning Using Nucleotide Kmers)
|
2024-11-07 |
|
cat
|
public |
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
|
2024-11-06 |
|
bbmap
|
public |
BBMap is a short read aligner, as well as various other bioinformatic tools.
|
2024-11-05 |
|
perl-ole-storage_lite
|
public |
Read and write OLE storage files.
|
2024-11-05 |
|
snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2024-11-05 |
|
snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2024-11-05 |
|
perl-devel-size
|
public |
Perl extension for finding the memory usage of Perl variables
|
2024-11-05 |
|
perl-perl-unsafe-signals
|
public |
Allow unsafe handling of signals in selected blocks
|
2024-11-05 |
|
perl-socket6
|
public |
IPv6 related part of the C socket.h defines and structure manipulators
|
2024-11-05 |
|
perl-scalar-util-numeric
|
public |
numeric tests for perl scalars
|
2024-11-05 |
|
perl-class-xsaccessor
|
public |
Generate fast XS accessors without runtime compilation
|
2024-11-05 |
|
perl-indirect
|
public |
Lexically warn about using the indirect method call syntax.
|
2024-11-05 |
|
perl-padwalker
|
public |
play with other peoples' lexical variables
|
2024-11-05 |
|
perl-time-hires
|
public |
High resolution alarm, sleep, gettimeofday, interval timers
|
2024-11-05 |
|
perl-json-create
|
public |
fast, minimal, UTF-8-only serialization of data to JSON
|
2024-11-05 |
|
perl-perlio-gzip
|
public |
PerlIO interface to gzip/gunzip
|
2024-11-05 |
|
perl-config-any
|
public |
Load configuration from different file formats, transparently
|
2024-11-05 |
|
tinscan
|
public |
Find alignment signatures characteristic of transposon insertion sites.
|
2024-11-05 |
|
perl-unicode-normalize
|
public |
Unicode Normalization Forms
|
2024-11-05 |
|
perl-unicode-map
|
public |
Map charsets from and to UTF-16 unicode
|
2024-11-05 |
|
perl-class-methodmaker
|
public |
Create generic methods for OO Perl
|
2024-11-05 |
|
perl-bloom-faster
|
public |
Perl extension for the c library libbloom.
|
2024-11-05 |
|
perl-json-parse
|
public |
Read JSON into a Perl variable
|
2024-11-05 |
|
perl-crypt-openssl-random
|
public |
No Summary
|
2024-11-05 |
|
perl-ipc-sharelite
|
public |
Lightweight interface to shared memory
|
2024-11-05 |
|
perl-heap-simple-xs
|
public |
No Summary
|
2024-11-05 |
|
perl-math-cdf
|
public |
Generate probabilities and quantiles from several statistical probability functions
|
2024-11-05 |
|
perl-crypt-openssl-rsa
|
public |
RSA encoding and decoding, using the openSSL libraries
|
2024-11-05 |
|
perl-file-copy-recursive
|
public |
Perl extension for recursively copying files and directories
|
2024-11-05 |
|
perl-filesys-df
|
public |
Perl extension for filesystem disk space information.
|
2024-11-05 |
|
perl-unicode-utf8
|
public |
Encoding and decoding of UTF-8 encoding form
|
2024-11-05 |
|
perl-math-random
|
public |
Random Number Generators
|
2024-11-05 |
|
ascat
|
public |
ASCAT is a method to derive copy number profiles of tumour cells,
accounting for normal cell admixture and tumour aneuploidy (Figure 1).
ASCAT infers tumour purity (the fraction of tumour cells) and ploidy (the
amount of DNA per tumour cell, expressed as multiples of haploid genomes)
from SNP array or massively parallel sequencing data, and calculates
whole-genome allele-specific copy number profiles (the number of copies of
both parental alleles for all SNP loci across the genome).
|
2024-11-04 |
|
mimeo
|
public |
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
|
2024-11-04 |
|
muscle
|
public |
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences
|
2024-11-03 |
|
bioconductor-protgenerics
|
public |
Generic infrastructure for Bioconductor mass spectrometry packages
|
2024-11-03 |
|
seqkit
|
public |
a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
|
2024-11-03 |
|
sentieon
|
public |
Accelerated performance bioinformatics tools for mapping and variant calling
|
2024-11-02 |
|
taxonkit
|
public |
A Cross-platform and Efficient NCBI Taxonomy Toolkit
|
2024-11-02 |
|
csvtk
|
public |
A cross-platform, efficient, practical CSV/TSV toolkit
|
2024-11-02 |
|
fgbio
|
public |
A set of tools for working with genomic and high throughput sequencing data, including UMIs
|
2024-11-02 |
|
hmftools-purple
|
public |
PURPLE is a purity ploidy estimator for tumor samples.
|
2024-10-31 |
|
teloclip
|
public |
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
|
2024-10-31 |
|
tirmite
|
public |
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
|
2024-10-31 |
|
gatk4
|
public |
Genome Analysis Toolkit (GATK4)
|
2024-10-31 |
|
perl-list-moreutils-xs
|
public |
Provide the stuff missing in List::Util in XS
|
2024-10-31 |
|
kleborate
|
public |
Kleborate: a tool for typing and screening pathogen genome assemblies
|
2024-10-30 |
