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setuptools_cython
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public |
Cython setuptools integration
|
2025-03-25 |
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bioconductor-dexseq
|
public |
Inference of differential exon usage in RNA-Seq
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2025-03-25 |
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tabulate
|
public |
Pretty-print tabular data
|
2025-03-25 |
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perl-time-hires
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public |
High resolution alarm, sleep, gettimeofday, interval timers
|
2025-03-25 |
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perl-encode-locale
|
public |
Determine the locale encoding
|
2025-03-25 |
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mummer
|
public |
MUMmer is a system for rapidly aligning entire genomes
|
2025-03-25 |
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lofreq
|
public |
A fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data
|
2025-03-25 |
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trimmomatic
|
public |
A flexible read trimming tool for Illumina NGS data
|
2025-03-25 |
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perl-gd
|
public |
Perl interface to the gd2 graphics library
|
2025-03-25 |
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htslib
|
public |
C library for high-throughput sequencing data formats.
|
2025-03-25 |
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htseq
|
public |
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
|
2025-03-25 |
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trinity
|
public |
Trinity assembles transcript sequences from Illumina RNA-Seq data.
|
2025-03-25 |
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stringtie
|
public |
StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome.
|
2025-03-25 |
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bioconductor-rtracklayer
|
public |
R interface to genome annotation files and the UCSC genome browser
|
2025-03-25 |
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bioconductor-deseq2
|
public |
Differential gene expression analysis based on the negative binomial distribution
|
2025-03-25 |
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bioconductor-rhdf5
|
public |
R Interface to HDF5
|
2025-03-25 |
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bioconductor-genomicranges
|
public |
Representation and manipulation of genomic intervals
|
2025-03-25 |
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bioconductor-genomeinfodb
|
public |
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
|
2025-03-25 |
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bioconductor-xvector
|
public |
Foundation of external vector representation and manipulation in Bioconductor
|
2025-03-25 |
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bioconductor-iranges
|
public |
Foundation of integer range manipulation in Bioconductor
|
2025-03-25 |
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bioconductor-s4vectors
|
public |
Foundation of vector-like and list-like containers in Bioconductor
|
2025-03-25 |
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bioconductor-biocgenerics
|
public |
S4 generic functions used in Bioconductor
|
2025-03-25 |
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freebayes
|
public |
Bayesian haplotype-based polymorphism discovery and genotyping.
|
2025-03-25 |
|
bamtools
|
public |
C++ API & command-line toolkit for working with BAM data
|
2025-03-25 |
|
bowtie2
|
public |
A fast and sensitive gapped read aligner.
|
2025-03-25 |
