|
bioconductor-tomoseqr
|
public |
R Package for Analyzing Tomo-seq Data
|
2024-12-14 |
|
bioconductor-spacemarkers
|
public |
Spatial Interaction Markers
|
2024-12-14 |
|
bioconductor-unifiedwmwqpcr
|
public |
Unified Wilcoxon-Mann Whitney Test for testing differential expression in qPCR data
|
2024-12-14 |
|
bioconductor-ggkegg
|
public |
Analyzing and visualizing KEGG information using the grammar of graphics
|
2024-12-14 |
|
bioconductor-opweight
|
public |
Optimal p-value weighting with independent information
|
2024-12-14 |
|
bioconductor-biocbook
|
public |
Write, containerize, publish and version Quarto books with Bioconductor
|
2024-12-14 |
|
bioconductor-mina
|
public |
Microbial community dIversity and Network Analysis
|
2024-12-14 |
|
ucsc-chopfalines
|
public |
Read in FA file with long lines and rewrite it with shorter lines
|
2024-12-14 |
|
r-jackstraw
|
public |
Test for association between the observed data and their systematic patterns of variations. Systematic patterns may be captured by latent variables using principal component analysis (PCA), factor analysis (FA), and related methods. The jackstraw enables statistical testing for association between observed variables and latent variables, as captured by PCs or other estimates. Similarly, unsupervised clustering, such as K-means clustering, partition around medoids (PAM), and others, finds subpopulations among the observed variables. The jackstraw estimates statistical significance of cluster membership, including unsupervised evaluation of cell identities in single cell RNA-seq. P-values and posterior probabilities allows one to rigorously evaluate the strength of cluster membership assignments.
|
2024-12-14 |
|
bioconductor-swfdr
|
public |
Estimation of the science-wise false discovery rate and the false discovery rate conditional on covariates
|
2024-12-14 |
|
bioconductor-parglms
|
public |
support for parallelized estimation of GLMs/GEEs
|
2024-12-14 |
|
bioconductor-macsquantifyr
|
public |
Fast treatment of MACSQuantify FACS data
|
2024-12-14 |
|
bioconductor-onlinefdr
|
public |
Online error rate control
|
2024-12-14 |
|
bioconductor-parody
|
public |
Parametric And Resistant Outlier DYtection
|
2024-12-14 |
|
bioconductor-rgsea
|
public |
Random Gene Set Enrichment Analysis
|
2024-12-14 |
|
bioconductor-rseqan
|
public |
R SeqAn
|
2024-12-14 |
|
bioconductor-rrho
|
public |
Inference on agreement between ordered lists
|
2024-12-14 |
|
pepnovo
|
public |
No Summary
|
2024-12-14 |
|
bioconductor-mvcclass
|
public |
Model-View-Controller (MVC) Classes
|
2024-12-14 |
|
bioconductor-cernanetsim
|
public |
Regulation Simulator of Interaction between miRNA and Competing RNAs (ceRNA)
|
2024-12-14 |
|
bioconductor-ancombc
|
public |
Microbiome differential abudance and correlation analyses with bias correction
|
2024-12-14 |
|
bioconductor-sights
|
public |
Statistics and dIagnostic Graphs for HTS
|
2024-12-14 |
|
bioconductor-sparsenetgls
|
public |
Using Gaussian graphical structue learning estimation in generalized least squared regression for multivariate normal regression
|
2024-12-14 |
|
bioconductor-bugsigdbr
|
public |
R-side access to published microbial signatures from BugSigDB
|
2024-12-14 |
|
bioconductor-dir.expiry
|
public |
Managing Expiration for Cache Directories
|
2024-12-14 |
|
r-isva
|
public |
Independent Surrogate Variable Analysis is an algorithm for feature selection in the presence of potential confounding factors (see Teschendorff AE et al 2011, <doi: 10.1093/bioinformatics/btr171>).
|
2024-12-14 |
|
bioconductor-mistyr
|
public |
Multiview Intercellular SpaTial modeling framework
|
2024-12-14 |
|
bioconductor-hgc
|
public |
A fast hierarchical graph-based clustering method
|
2024-12-14 |
|
bioconductor-openstats
|
public |
A Robust and Scalable Software Package for Reproducible Analysis of High-Throughput genotype-phenotype association
|
2024-12-14 |
|
bioconductor-timescape
|
public |
Patient Clonal Timescapes
|
2024-12-14 |
|
bioconductor-phosphonormalizer
|
public |
Compensates for the bias introduced by median normalization in
|
2024-12-14 |
|
bioconductor-ggtree
|
public |
an R package for visualization of tree and annotation data
|
2024-12-14 |
|
bioconductor-preprocesscore
|
public |
A collection of pre-processing functions
|
2024-12-14 |
|
bioconductor-ompbam
|
public |
C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files
|
2024-12-14 |
|
bioconductor-diffgeneanalysis
|
public |
Performs differential gene expression Analysis
|
2024-12-14 |
|
bioconductor-diffustats
|
public |
Diffusion scores on biological networks
|
2024-12-14 |
|
bioconductor-asset
|
public |
An R package for subset-based association analysis of heterogeneous traits and subtypes
|
2024-12-14 |
|
bioconductor-pathwaypca
|
public |
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection
|
2024-12-14 |
|
bioconductor-tidysbml
|
public |
Extract SBML's data into dataframes
|
2024-12-14 |
|
bioconductor-clst
|
public |
Classification by local similarity threshold
|
2024-12-14 |
|
pcasuite
|
public |
PCAzip compresses a trajectory, recentering the snapshots using a standard RMS or a gaussian version.
|
2024-12-14 |
|
bioconductor-cellxgenedp
|
public |
Discover and Access Single Cell Data Sets in the CELLxGENE Data Portal
|
2024-12-14 |
|
bioconductor-inpower
|
public |
An R package for computing the number of susceptibility SNPs
|
2024-12-14 |
|
bioconductor-ctc
|
public |
Cluster and Tree Conversion.
|
2024-12-14 |
|
hmnillumina
|
public |
A parser for Illumina run
|
2024-12-14 |
|
bioconductor-hpip
|
public |
Host-Pathogen Interaction Prediction
|
2024-12-14 |
|
bioconductor-isolde
|
public |
Integrative Statistics of alleLe Dependent Expression
|
2024-12-14 |
|
bioconductor-gladiatox
|
public |
R Package for Processing High Content Screening data
|
2024-12-14 |
|
bioconductor-rcaspar
|
public |
A package for survival time prediction based on a piecewise baseline hazard Cox regression model.
|
2024-12-14 |
|
bioconductor-mirtarrnaseq
|
public |
mirTarRnaSeq
|
2024-12-14 |
