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flair
|
public |
Correction, isoform definition, and alternative splicing analysis of noisy reads (ONT and PacBio).
|
2025-04-18 |
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scoring-matrices
|
public |
Dependency free, Cython-compatible scoring matrices to use with biological sequences.
|
2025-04-18 |
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dbcan
|
public |
Standalone version of dbCAN annotation tool for automated CAZyme annotation.
|
2025-04-18 |
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amulety
|
public |
Python package to create embeddings of BCR amino acid sequences.
|
2025-04-18 |
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syri
|
public |
Synteny and rearrangement identifier between whole-genome assemblies.
|
2025-04-18 |
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gfftk
|
public |
GFFtk: genome annotation GFF3 tool kit
|
2025-04-17 |
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sigprofilermatrixgenerator
|
public |
SigProfiler matrix generator tool.
|
2025-04-17 |
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trgt
|
public |
Tandem repeat genotyping and visualization from PacBio HiFi data
|
2025-04-17 |
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libcarna
|
public |
Real-time 3D visualization of biomedical data and beyond
|
2025-04-17 |
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roadies
|
public |
Reference-free Orthology-free Alignment-free DIscordance aware Estimation of Species tree (ROADIES).
|
2025-04-16 |
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captus
|
public |
Captus: Assembly of Phylogenomic Datasets from High-Throughput Sequencing data.
|
2025-04-16 |
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r-ukbrapr
|
public |
R functions to use in the UK Biobank Research Analysis Platform (RAP)
|
2025-04-16 |
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ncbi-stxtyper
|
public |
StxTyper identifies and types Stx operons from assembled genomic sequence.
|
2025-04-16 |
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primer3
|
public |
Design PCR primers from DNA sequence. From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it.
|
2025-04-16 |
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grz-cli
|
public |
Tool for validation, encryption and upload of MV submissions to GDCs.
|
2025-04-16 |
|
annonars
|
public |
Genome annotation based on Rust and RocksDB.
|
2025-04-16 |
|
mehari
|
public |
VEP-like tool for sequence ontology and HGVS annotation of VCF files written in Rust.
|
2025-04-16 |
|
muat
|
public |
A package for Mutation Attention Tool
|
2025-04-16 |
|
fastp
|
public |
A ultra-fast FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...).
|
2025-04-16 |
|
atlas
|
public |
ATLAS: Analysis Tools for Ancient and Low-depth Samples
|
2025-04-16 |
|
augustus
|
public |
AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller. It can be used as an ab initio program, which means it bases its prediction purely on the sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources such as EST, MS/MS, protein alignments and synthenic genomic alignments.
|
2025-04-16 |
|
snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-04-16 |
|
snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-04-16 |
|
tower-cli
|
public |
The Tower CLI an interface to Nextflow Tower via the CLI
|
2025-04-16 |
|
panaln
|
public |
Indexing pangenome for read alignment.
|
2025-04-16 |
