| Package Name | Access | Summary | Updated |
|---|---|---|---|
| dipper | public | DIPPER: An ultrafast tool for phylogenetic tree reconstruction. | 2025-10-06 |
| dxpy | public | DNAnexus Platform API bindings for Python | 2025-10-06 |
| alloshp | public | From mapped reads to Single Homeologous Polymorphisms (SHPs): pipeline for phylogenetic studies of allopolyploids | 2025-10-06 |
| f5c | public | An optimised re-implementation of the call-methylation and eventalign modules in Nanopolish. | 2025-10-06 |
| atac | public | No Summary | 2025-10-06 |
| sim4db | public | No Summary | 2025-10-06 |
| snoscan | public | Search for C/D box methylation guide snoRNA genes in a genomic sequence | 2025-10-06 |
| vsearch | public | A versatile open source tool for metagenomics (USEARCH alternative). | 2025-10-06 |
| msisensor2 | public | MSIsensor2 is a novel algorithm based machine learning, featuring a large upgrade in the microsatellite instability (MSI) detection for tumor only sequencing data, including Cell-Free DNA (cfDNA), Formalin-Fixed Paraffin-Embedded(FFPE) and other sample types. | 2025-10-06 |
| hictk | public | Blazing fast toolkit to work with .hic and .cool files | 2025-10-06 |
| scispacy | public | A full SpaCy pipeline and models for scientific/biomedical documents. | 2025-10-06 |
| carpedeam | public | CarpeDeam - A metagenomic assembler for heavily damaged ancient datasets. | 2025-10-06 |
| coot-headless | public | Coot Headless API - Software for macromolecular model building. | 2025-10-06 |
| scarap | public | A toolkit for prokaryotic comparative genomics | 2025-10-05 |
| carp | public | carp - quantify the rearrangement complexity of pangenomes and their graphs. | 2025-10-05 |
| triqler | public | A combined identification and quantification error model of label-free protein quantification. | 2025-10-05 |
| edentity | public | eDentity metabarcoding pipeline | 2025-10-05 |
| cmat | public | ClinVar Mapping and Annotation Toolkit. | 2025-10-05 |
| hmftools-pave | public | PAVE annotates SNV/MNV/INDEL calls with consequence on corresponding genes, transcripts, and proteins. | 2025-10-05 |
| hmftools-lilac | public | LILAC is a WGS tool to determine HLA Class I types. | 2025-10-05 |
| macs2 | public | Model Based Analysis for ChIP-Seq data | 2025-10-05 |
| snakemake-minimal | public | A popular workflow management system aiming at full in-silico reproducibility. | 2025-10-04 |
| snakemake | public | A popular workflow management system aiming at full in-silico reproducibility. | 2025-10-04 |
| r-cnaqc | public | Copy number quality control | 2025-10-04 |
| panorama | public | A robust pangenome-based method for predicting and comparing biological systems across species. | 2025-10-04 |
