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bioconductor-dada2
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public |
Accurate, high-resolution sample inference from amplicon sequencing data
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2025-04-21 |
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latch
|
public |
The Latch python bioinformatics framework
|
2025-04-21 |
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usalign
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public |
Universal structure alignment of monomeric, complex proteins and nucleic acids
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2025-04-21 |
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maxit
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public |
MAXIT assists in the processing and curation of macromolecular structure data.
|
2025-04-21 |
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strangepg
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public |
Strange pangenome-scale interactive graph visualizer
|
2025-04-21 |
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iow
|
public |
Implementation of Balanced Parentheses
|
2025-04-21 |
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unifrac
|
public |
Fast phylogenetic diversity calculations
|
2025-04-21 |
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jbrowse2
|
public |
The JBrowse 2 Genome Browser
|
2025-04-21 |
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ucsc-cell-browser
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public |
A browser for single-cell data, main site at http://cells.ucsc.edu. UCSC Cellbrowser, an interactive browser for single cell data. Includes importers and basic pipelines for text files, Seurat, Scanpy and Cellranger. All Javascript - does not require a server backend.
|
2025-04-21 |
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r-pscbs
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public |
Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
|
2025-04-21 |
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ncbi-datasets-pyclient
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public |
NCBI Datasets API
|
2025-04-21 |
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perl-mime-types
|
public |
Definition of MIME types
|
2025-04-21 |
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oakvar
|
public |
OakVar - Genomic Variant Analysis Platform
|
2025-04-21 |
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argnorm
|
public |
Normalize antibiotic resistance genes (ARGs) abundance tables (e.g., from metagenomics) by using the ARO ontology (developed by CARD).
|
2025-04-21 |
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pmultiqc
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public |
Python package for quality control of proteomics datasets, based on multiqc package
|
2025-04-20 |
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quantms-utils
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public |
Python package with scripts and helpers for the quantms workflow.
|
2025-04-20 |
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pytantan
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public |
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.
|
2025-04-19 |
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needletail
|
public |
Fast FASTX parsing in Python
|
2025-04-19 |
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mappy
|
public |
Minimap2 Python binding
|
2025-04-18 |
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miniprot
|
public |
Miniprot aligns a protein sequence against a genome with affine gap penalty, splicing and frameshift.
It is primarily intended for annotating protein-coding genes in a new species using known genes from other species.
|
2025-04-18 |
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minimap2
|
public |
A versatile pairwise aligner for genomic and spliced nucleotide sequences.
|
2025-04-18 |
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pybiolib
|
public |
BioLib Python Client
|
2025-04-18 |
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pilea
|
public |
Pilea: profiling bacterial growth dynamics from metagenomes with sketching
|
2025-04-18 |
|
mimick
|
public |
Simulate linked-read data.
|
2025-04-18 |
|
stripepy-hic
|
public |
StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning
|
2025-04-18 |
