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ninja-nj
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public |
Nearly Infinite Neighbor Joining Application
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2025-03-25 |
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pypints
|
public |
Peak Identifier for Nascent Transcripts Starts (PINTS)
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2025-03-25 |
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hocort
|
public |
HoCoRT - Host Contamination Removal Tool
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2025-03-25 |
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multisub
|
public |
multiSub is a command-line tool to prepare and/or submit a SARS-CoV-2 genome sequence to the NCBI Genbank, EBI ENA and GISAID sequence repositories.
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2025-03-25 |
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parebrick
|
public |
A bioinf tool for finding genome rearrangements in bacterial genomes.
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2025-03-25 |
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cstag
|
public |
Python module to manipulate the minimap2's CS tag
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2025-03-25 |
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ngs-smap
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public |
SMAP is an analysis tool for stack-based NGS read mapping
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2025-03-25 |
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leviosam2
|
public |
Fast and accurate coordinate conversion between assemblies.
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2025-03-25 |
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haplocheck
|
public |
Detects in-sample contamination in mtDNA or WGS sequencing studies by analyzing the mitchondrial content.
|
2025-03-25 |
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bg
|
public |
Implementation of Breakpoint Graph data structure
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2025-03-25 |
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minute
|
public |
MINUTE-ChIP data analysis workflow
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2025-03-25 |
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ifcnv
|
public |
ifCNV: a novel isolation-forest-based package to detect copy number variations from various NGS datasets.
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2025-03-25 |
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titanomics
|
public |
A comprehensive multi-omics data analysis pipeline.
|
2025-03-25 |
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bialign
|
public |
Bialignment of RNAs and proteins
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2025-03-25 |
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chiton
|
public |
Chiton provides a Python wrapper to commonly used bioinformatics programs.
|
2025-03-25 |
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d4binding
|
public |
The C/C++ binding for the D4 file format.
|
2025-03-25 |
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d4tools
|
public |
The D4 command line utility program
|
2025-03-25 |
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annotwg
|
public |
Tool for annotating large VCF files
|
2025-03-25 |
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pyfish
|
public |
Plotting tool for evolutionary population dynamics. Creates a Fish (Muller) plot.
|
2025-03-25 |
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macs
|
public |
Model Based Analysis for ChIP-Seq data
|
2025-03-25 |
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squire
|
public |
Quantitative, locus-specific view of transposable element expression.
|
2025-03-25 |
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gfastats
|
public |
The swiss army knife for genome assembly
|
2025-03-25 |
|
prodigal-gv
|
public |
A fork of Prodigal meant to improve gene calling for giant viruses
|
2025-03-25 |
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lepwrap
|
public |
The Snakemake pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring+orienting genome assemblies.
|
2025-03-25 |
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pbskera
|
public |
PacBio tool to split concatenated read designs
|
2025-03-25 |
|
epytope
|
public |
A Framework for Epitope Detection and Vaccine Design
|
2025-03-25 |
|
goat
|
public |
Query metadata for any taxon across the tree of life.
|
2025-03-25 |
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knotinframe
|
public |
Predicts -1 frameshift sites with simple pseudoknots
|
2025-03-25 |
|
fq
|
public |
fq is a library to generate and validate FASTQ file pairs.
|
2025-03-25 |
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atlas-fastq-provider
|
public |
A package to provide FASTQs via download or file system linking.
|
2025-03-25 |
|
metamlst
|
public |
A computational pipeline for MLST typing from metagenomic data
|
2025-03-25 |
|
metacerberus
|
public |
Versatile Functional Ontology Assignments for Metagenomes via Hidden Markov Model (HMM) searching with environmental focus of shotgun meta'omics data
|
2025-03-25 |
|
theiacov-gc
|
public |
Command-line version of the TheiaCov genomic characterization workflow for SARS-CoV-2.
|
2025-03-25 |
|
antismash-lite
|
public |
antiSMASH - the antibiotics and Secondary Metabolite Analysis SHell
|
2025-03-25 |
|
perl-set-object
|
public |
Unordered collections (sets) of Perl Objects
|
2025-03-25 |
|
mercat2
|
public |
versatile k-mer counter and diversity estimator for database independent property analysis (DIPA) for multi-omic analysis
|
2025-03-25 |
|
secedo
|
public |
SNV-based clustering for single-cell sequencing data
|
2025-03-25 |
|
hi-corrector
|
public |
Remove biases from chromatin contact matrices generated by genome-wide proximity ligation assays, e.g. Hi-C and its variant TCC
|
2025-03-25 |
|
metaomestats
|
public |
Scripts for calculating statistics from FASTA sequences
|
2025-03-25 |
|
r-consensustme
|
public |
ConsensusTME is a consensus based approach to generating cancer specific gene sets for multiple cell types found within the tumour microenvironment. This package allows access to these genesets and provides a wrapper for using these gene sets with various statistical frameworks to generate normalised enrichment scores. These can be used to identify relative quantities of cell types across multiple samples.
|
2025-03-25 |
|
btyper3
|
public |
In silico taxonomic classification of Bacillus cereus group isolates using assembled genomes
|
2025-03-25 |
|
r-mmcpcounter
|
public |
Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data
|
2025-03-25 |
|
ebcsgen
|
public |
eBSCgen is a tool for development and analysis of models written in Biochemical Space Language (BCSL).
|
2025-03-25 |
|
simscsntree
|
public |
Simulating single cell sequencing data
|
2025-03-25 |
|
tidk
|
public |
Identify and find telomeres, or telomeric repeats in a genome.
|
2025-03-25 |
|
splitp
|
public |
splitp is a streaming read pre-preprocessor.
|
2025-03-25 |
|
ngscheckmate
|
public |
Software package for identifying next generation sequencing (NGS) data files from the same individual.
|
2025-03-25 |
|
perl-pod-eventual
|
public |
read a POD document as a series of trivial events
|
2025-03-25 |
|
perl-test2-plugin-nowarnings
|
public |
Fail if tests warn
|
2025-03-25 |
|
quatradis
|
public |
A set of tools to analyse the output from TraDIS analyses
|
2025-03-25 |
