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amplisim
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public |
Plain simple amplicon sequence simulator for in-silico genomic sequencing assays.
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2025-04-22 |
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pbsim3
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public |
A simulator for all types of Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT) long reads
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2025-04-22 |
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cospar
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public |
A toolkit for dynamic inference of cell fate by integrating state and lineage information.
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2025-04-22 |
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phylornn
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public |
PhyloRNN
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2025-04-22 |
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noise2read
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public |
Turn noise to read
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2025-04-22 |
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gmwi2
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public |
Enhanced Health Status Prediction from Gut Microbiome Taxonomic Profiles
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2025-04-22 |
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viralmsa
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public |
Reference-guided multiple sequence alignment of viral genomes
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2025-04-22 |
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viral_consensus
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public |
Fast viral consensus genome reconstruction
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2025-04-22 |
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dupsifter
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public |
A tool for PCR duplicate marking of WGBS (and WGS) data.
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2025-04-22 |
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ice-cream
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public |
ICEcream: Integrative and Conjugative Elements Classification and gRaphical gEne Arrangement Method
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2025-04-22 |
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tissuumaps
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public |
TissUUmaps is a lightweight viewer that uses basic web tools to visualize gene expression data or any kind of point data on top of whole slide images
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2025-04-22 |
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decom
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public |
decOM: Similarity-based microbial source tracking for contamination assessment of ancient oral samples using k-mer-based methods
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2025-04-22 |
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versionix
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public |
Get version of any tools.
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2025-04-22 |
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r-ldweaver
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public |
Perform genomewide epistasis analysis by evaluating the LD structure in bacteria.
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2025-04-22 |
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pneumo-typer
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public |
Pneumo-Typer is a high-throughput capsule genotype visualization tool with integrated serotype and sequence type prediction for Streptococcus pneumoniae
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2025-04-22 |
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go-figure
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public |
GO-Figure! offers a simple solution for command-line plotting of informative summary visualisations of lists of GO terms, designed to support exploratory data analyses and multiple dataset comparisons.
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2025-04-22 |
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dnoise
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public |
Denoise sequence data sets from Illumina using distance corrected according to the entropy of each codon position
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2025-04-22 |
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r-metablastr
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public |
The metablastr package harnesses the power of BLAST by providing interface functions between it and R.
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2025-04-22 |
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melon
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public |
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
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2025-04-22 |
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metadmg
|
public |
metaDMG-cpp: fast and efficient method for estimating mutation and damage rates in ancient DNA data
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2025-04-22 |
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transannot
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public |
TransAnnot: a fast transcriptome annotation pipeline.
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2025-04-22 |
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hifieval
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public |
Evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads)
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2025-04-22 |
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pixelator
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public |
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
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2025-04-22 |
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solote
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public |
A conversion utility is conveniently packaged with SoloTE, in order to tranform the RepeatMasker out file to the BED format required by SoloTE
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2025-04-22 |
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marker-magu
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public |
Marker-MAGu: Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes
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2025-04-22 |
