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esme_pnetcdf_mvapich_4_0
|
public |
PnetCDF - Parallel netCDF
|
2025-04-18 |
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esme_esmf_mvapich_4_0
|
public |
ESMF - Earth System Modeling Framework
|
2025-04-18 |
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esme_mvapich_4_0
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
|
2025-04-18 |
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esme_netcdf-fortran_mvapich_4_0
|
public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-04-18 |
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esme_netcdf-c_mvapich_4_0
|
public |
NetCDF-C - netCDF interface for C
|
2025-04-18 |
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esme_pio_mvapich_4_0
|
public |
ParallelIO - High-level parallel I/O library
|
2025-04-18 |
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esme_hdf5_mvapich_4_0
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-04-18 |
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esme_omb_mvapich_4_0
|
public |
OSU Micro Benchmarks
|
2025-04-18 |
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sentieon
|
public |
Accelerated performance bioinformatics tools for mapping and variant calling
|
2025-04-18 |
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hictkpy
|
public |
Python bindings for hictk: read and write .cool and .hic files directly from Python
|
2025-04-18 |
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diamond
|
public |
Accelerated BLAST compatible local sequence aligner.
|
2025-04-18 |
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rgi
|
public |
This tool provides a preliminary annotation of your DNA sequence(s) based upon the data available in The Comprehensive Antibiotic Resistance Database (CARD). Hits to genes tagged with Antibiotic Resistance ontology terms will be highlighted. As CARD expands to include more pathogens, genomes, plasmids, and ontology terms this tool will grow increasingly powerful in providing first-pass detection of antibiotic resistance associated genes. See license at CARD website
|
2025-04-18 |
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emboss
|
public |
The European Molecular Biology Open Software Suite
|
2025-04-18 |
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gtdbtk
|
public |
A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
|
2025-04-18 |
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msoma
|
public |
mSOMA: Somatic Mutation Detection using a betabinomial null model
|
2025-04-18 |
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mgnify-pipelines-toolkit
|
public |
Collection of scripts and tools for MGnify pipelines.
|
2025-04-18 |
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codingquarry
|
public |
CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts.
|
2025-04-18 |
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squirrel
|
public |
Some QUIck Reconstruction to Resolve Evolutionary Links
|
2025-04-18 |
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hmftools-chord
|
public |
Predict HRD using somatic mutations contexts
|
2025-04-18 |
|
perl-io-interactive
|
public |
Utilities for interactive I/O
|
2025-04-18 |
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vuegen
|
public |
VueGen automates the creation of reports from bioinformatics outputs,
supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js,
Jupyter notebooks, and Streamlit web applications. Users simply
provide a directory with output files—such as plots, tables, networks,
Markdown text, and HTML files—and VueGen compiles them into a structured report.
|
2025-04-18 |
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rdrpcatch
|
public |
RNA virus RdRp sequence scanner.
|
2025-04-18 |
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vcfdist
|
public |
vcfdist: benchmarking phased germline variant calls in VCF format
|
2025-04-18 |
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gemma
|
public |
Linear mixed models (LMMs) for genome-wide association (GWA)
|
2025-04-18 |
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gadma
|
public |
Genetic Algorithm for Demographic Inference
|
2025-04-18 |
