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pysctransform
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public |
Python package to perform normalization and variance-stabilization of single-cell data.
|
2025-04-22 |
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vcfx
|
public |
VCFX: A Comprehensive VCF Manipulation Toolkit
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2025-04-22 |
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metaspace2020
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public |
Python library for connecting to the METASPACE platform.
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2025-04-22 |
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ogtfinder
|
public |
OGTFinder is an optimal growth temperature prediction tool for prokaryotes using proteome-derived features.
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2025-04-22 |
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ddqc
|
public |
Biology-centered data-driven quality control for scRNA-seq.
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2025-04-22 |
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yleaf-pipelines
|
public |
Yleaf-pipelines - A pipeline-optimized version of Yleaf, a tool for Y-chromosome haplogroup prediction.
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2025-04-22 |
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soi
|
public |
Orthology Index (OrthoIndex or OI) determines the orthology of a syntenic block.
|
2025-04-22 |
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ngsfetch
|
public |
Fast retrieval of metadata and fastq files with ffq and aria2c
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2025-04-22 |
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aliceasm
|
public |
Efficient HiFi genome assembler producing haplotype-separated assemblies
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2025-04-22 |
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vambcore
|
public |
Performant backend functions for the Vamb binning tool
|
2025-04-22 |
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td2
|
public |
TD2: a tool to find protein coding regions in transcripts
|
2025-04-22 |
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ncbi-datasets-pyclient
|
public |
NCBI Datasets API
|
2025-04-22 |
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genotypy
|
public |
Automatically detect genomic barcodes integrated into loci of interest from sequencing data
|
2025-04-22 |
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scanpy-cli
|
public |
CLI for Scanpy
|
2025-04-22 |
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yleaf
|
public |
Yleaf - A tool for Y-chromosome haplogroup prediction
|
2025-04-22 |
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psauron
|
public |
PSAURON: a machine learning model for rapid assessment of protein coding gene annotation
|
2025-04-22 |
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spacerextractor
|
public |
Extract CRISPR spacers from metagenome short reads.
|
2025-04-22 |
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grz-pydantic-models
|
public |
Pydantic models for the GRZ metadata schema
|
2025-04-22 |
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fastcov
|
public |
This package installs fastcov and all it's dependencies. fastcov is used to plot coverage plots based on BAM files.
|
2025-04-22 |
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alientrimmer
|
public |
Tool for trimming non-confident bases and alien oligo-nucleotide sequences from sequencing reads.
|
2025-04-22 |
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bcftools-liftover-plugin
|
public |
Tools to work with GWAS-VCF summary statistics files (liftover plugin only)
|
2025-04-22 |
|
longcalld
|
public |
longcallD: local-haplotagging-based small and structural variant calling
|
2025-04-22 |
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isotools
|
public |
Framework for the analysis of long read transcriptome sequencing data
|
2025-04-22 |
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spacedust
|
public |
De novo discovery of conserved gene clusters in microbial genomes with Spacedust
|
2025-04-22 |
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fastga
|
public |
FastGA - A Fast Genome Aligner.
|
2025-04-22 |
